Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04140 and SMc04139 are separated by 23 nucleotides SMc04139 and SMc04138 are separated by 1 nucleotides
SMc04140: SMc04140 - ABC transporter ATP-binding protein, at 131,480 to 132,562
SMc04140
SMc04139: SMc04139 - oxidoreductase, at 132,586 to 133,659
SMc04139
SMc04138: SMc04138 - oxidoreductase, at 133,661 to 134,677
SMc04138
Position (kb) 132
133
134 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 131.896 kb on - strand, within SMc04140 at 131.896 kb on - strand, within SMc04140 at 131.994 kb on + strand, within SMc04140 at 131.994 kb on + strand, within SMc04140 at 131.994 kb on + strand, within SMc04140 at 132.310 kb on - strand, within SMc04140 at 132.310 kb on - strand, within SMc04140 at 132.483 kb on - strand at 132.483 kb on - strand at 132.595 kb on - strand at 132.674 kb on + strand at 132.881 kb on + strand, within SMc04139 at 132.882 kb on - strand, within SMc04139 at 133.096 kb on - strand, within SMc04139 at 133.096 kb on - strand, within SMc04139 at 133.096 kb on - strand, within SMc04139 at 133.096 kb on - strand, within SMc04139 at 133.172 kb on + strand, within SMc04139 at 133.173 kb on - strand, within SMc04139 at 133.173 kb on - strand, within SMc04139 at 133.176 kb on - strand at 133.176 kb on - strand, within SMc04139 at 133.217 kb on + strand, within SMc04139 at 133.218 kb on - strand, within SMc04139 at 133.277 kb on + strand, within SMc04139 at 133.596 kb on - strand at 134.017 kb on + strand, within SMc04138 at 134.017 kb on + strand, within SMc04138 at 134.018 kb on - strand, within SMc04138 at 134.160 kb on + strand, within SMc04138 at 134.311 kb on - strand, within SMc04138 at 134.536 kb on - strand, within SMc04138 at 134.628 kb on + strand at 134.628 kb on + strand at 134.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 131,896 - SMc04140 0.38 +1.7 131,896 - SMc04140 0.38 +0.2 131,994 + SMc04140 0.47 -0.2 131,994 + SMc04140 0.47 -3.0 131,994 + SMc04140 0.47 -1.0 132,310 - SMc04140 0.77 -2.7 132,310 - SMc04140 0.77 -0.9 132,483 - -1.9 132,483 - -0.3 132,595 - -0.9 132,674 + +1.6 132,881 + SMc04139 0.27 -1.3 132,882 - SMc04139 0.28 -1.3 133,096 - SMc04139 0.47 +0.8 133,096 - SMc04139 0.47 -3.3 133,096 - SMc04139 0.47 -0.3 133,096 - SMc04139 0.47 +0.6 133,172 + SMc04139 0.55 +1.3 133,173 - SMc04139 0.55 +1.5 133,173 - SMc04139 0.55 +1.0 133,176 - -0.1 133,176 - SMc04139 0.55 -0.1 133,217 + SMc04139 0.59 +0.6 133,218 - SMc04139 0.59 -0.9 133,277 + SMc04139 0.64 -2.3 133,596 - +0.9 134,017 + SMc04138 0.35 +1.5 134,017 + SMc04138 0.35 +0.7 134,018 - SMc04138 0.35 +0.8 134,160 + SMc04138 0.49 -0.7 134,311 - SMc04138 0.64 -0.3 134,536 - SMc04138 0.86 +2.3 134,628 + -0.9 134,628 + -1.9 134,629 - -2.7
Or see this region's nucleotide sequence