Strain Fitness in Sinorhizobium meliloti 1021 around SMc03968

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03966 and SMc03967 are separated by 74 nucleotidesSMc03967 and SMc03968 are separated by 168 nucleotidesSMc03968 and SMc03969 are separated by 184 nucleotides SMc03966: SMc03966 - Holliday junction DNA helicase RuvA, at 2,960,088 to 2,960,705 SMc03966 SMc03967: SMc03967 - Holliday junction resolvase, at 2,960,780 to 2,961,292 SMc03967 SMc03968: SMc03968 - oxidoreductase, at 2,961,461 to 2,962,450 SMc03968 SMc03969: SMc03969 - hypothetical protein, at 2,962,635 to 2,963,381 SMc03969 Position (kb) 2961 2962 2963Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2960.551 kb on + strand, within SMc03966at 2960.765 kb on - strandat 2960.911 kb on + strand, within SMc03967at 2960.911 kb on + strand, within SMc03967at 2960.911 kb on + strand, within SMc03967at 2961.420 kb on - strandat 2962.059 kb on + strand, within SMc03968at 2962.059 kb on + strand, within SMc03968at 2962.060 kb on - strand, within SMc03968at 2962.060 kb on - strand, within SMc03968at 2962.060 kb on - strand, within SMc03968at 2962.292 kb on + strand, within SMc03968at 2962.293 kb on - strand, within SMc03968at 2962.293 kb on - strand, within SMc03968at 2962.293 kb on - strand, within SMc03968at 2962.544 kb on + strandat 2962.545 kb on - strandat 2962.769 kb on + strand, within SMc03969at 2962.769 kb on + strand, within SMc03969at 2962.770 kb on - strand, within SMc03969at 2962.850 kb on - strand, within SMc03969at 2962.960 kb on + strand, within SMc03969at 2962.961 kb on - strand, within SMc03969at 2962.961 kb on - strand, within SMc03969at 2962.961 kb on - strand, within SMc03969at 2962.961 kb on - strand, within SMc03969at 2963.046 kb on + strand, within SMc03969at 2963.047 kb on - strand, within SMc03969at 2963.047 kb on - strand, within SMc03969at 2963.187 kb on - strand, within SMc03969at 2963.424 kb on - strandat 2963.424 kb on - strandat 2963.425 kb on + strandat 2963.425 kb on + strandat 2963.425 kb on + strandat 2963.426 kb on - strandat 2963.426 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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2,960,551 + SMc03966 0.75 -1.5
2,960,765 - -1.5
2,960,911 + SMc03967 0.26 -2.2
2,960,911 + SMc03967 0.26 -1.3
2,960,911 + SMc03967 0.26 -1.3
2,961,420 - -0.1
2,962,059 + SMc03968 0.60 -2.0
2,962,059 + SMc03968 0.60 +0.2
2,962,060 - SMc03968 0.61 -0.3
2,962,060 - SMc03968 0.61 -1.6
2,962,060 - SMc03968 0.61 -2.4
2,962,292 + SMc03968 0.84 -1.4
2,962,293 - SMc03968 0.84 -2.2
2,962,293 - SMc03968 0.84 -1.3
2,962,293 - SMc03968 0.84 -0.4
2,962,544 + -2.3
2,962,545 - +0.6
2,962,769 + SMc03969 0.18 +1.6
2,962,769 + SMc03969 0.18 +1.9
2,962,770 - SMc03969 0.18 -1.3
2,962,850 - SMc03969 0.29 +1.6
2,962,960 + SMc03969 0.44 +1.4
2,962,961 - SMc03969 0.44 +1.7
2,962,961 - SMc03969 0.44 +0.2
2,962,961 - SMc03969 0.44 +1.6
2,962,961 - SMc03969 0.44 +0.7
2,963,046 + SMc03969 0.55 -4.1
2,963,047 - SMc03969 0.55 -3.2
2,963,047 - SMc03969 0.55 +1.3
2,963,187 - SMc03969 0.74 +0.5
2,963,424 - +2.6
2,963,424 - -2.3
2,963,425 + +1.1
2,963,425 + -1.2
2,963,425 + +0.5
2,963,426 - -0.9
2,963,426 - -0.7

Or see this region's nucleotide sequence