Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03966 and SMc03967 are separated by 74 nucleotides SMc03967 and SMc03968 are separated by 168 nucleotides SMc03968 and SMc03969 are separated by 184 nucleotides
SMc03966: SMc03966 - Holliday junction DNA helicase RuvA, at 2,960,088 to 2,960,705
SMc03966
SMc03967: SMc03967 - Holliday junction resolvase, at 2,960,780 to 2,961,292
SMc03967
SMc03968: SMc03968 - oxidoreductase, at 2,961,461 to 2,962,450
SMc03968
SMc03969: SMc03969 - hypothetical protein, at 2,962,635 to 2,963,381
SMc03969
Position (kb)
2961
2962
2963 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2960.551 kb on + strand, within SMc03966 at 2960.765 kb on - strand at 2960.911 kb on + strand, within SMc03967 at 2960.911 kb on + strand, within SMc03967 at 2960.911 kb on + strand, within SMc03967 at 2961.420 kb on - strand at 2962.059 kb on + strand, within SMc03968 at 2962.059 kb on + strand, within SMc03968 at 2962.060 kb on - strand, within SMc03968 at 2962.060 kb on - strand, within SMc03968 at 2962.060 kb on - strand, within SMc03968 at 2962.292 kb on + strand, within SMc03968 at 2962.293 kb on - strand, within SMc03968 at 2962.293 kb on - strand, within SMc03968 at 2962.293 kb on - strand, within SMc03968 at 2962.544 kb on + strand at 2962.545 kb on - strand at 2962.769 kb on + strand, within SMc03969 at 2962.769 kb on + strand, within SMc03969 at 2962.770 kb on - strand, within SMc03969 at 2962.850 kb on - strand, within SMc03969 at 2962.960 kb on + strand, within SMc03969 at 2962.961 kb on - strand, within SMc03969 at 2962.961 kb on - strand, within SMc03969 at 2962.961 kb on - strand, within SMc03969 at 2962.961 kb on - strand, within SMc03969 at 2963.046 kb on + strand, within SMc03969 at 2963.047 kb on - strand, within SMc03969 at 2963.047 kb on - strand, within SMc03969 at 2963.187 kb on - strand, within SMc03969 at 2963.424 kb on - strand at 2963.424 kb on - strand at 2963.425 kb on + strand at 2963.425 kb on + strand at 2963.425 kb on + strand at 2963.426 kb on - strand at 2963.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 2,960,551 + SMc03966 0.75 -1.5 2,960,765 - -1.5 2,960,911 + SMc03967 0.26 -2.2 2,960,911 + SMc03967 0.26 -1.3 2,960,911 + SMc03967 0.26 -1.3 2,961,420 - -0.1 2,962,059 + SMc03968 0.60 -2.0 2,962,059 + SMc03968 0.60 +0.2 2,962,060 - SMc03968 0.61 -0.3 2,962,060 - SMc03968 0.61 -1.6 2,962,060 - SMc03968 0.61 -2.4 2,962,292 + SMc03968 0.84 -1.4 2,962,293 - SMc03968 0.84 -2.2 2,962,293 - SMc03968 0.84 -1.3 2,962,293 - SMc03968 0.84 -0.4 2,962,544 + -2.3 2,962,545 - +0.6 2,962,769 + SMc03969 0.18 +1.6 2,962,769 + SMc03969 0.18 +1.9 2,962,770 - SMc03969 0.18 -1.3 2,962,850 - SMc03969 0.29 +1.6 2,962,960 + SMc03969 0.44 +1.4 2,962,961 - SMc03969 0.44 +1.7 2,962,961 - SMc03969 0.44 +0.2 2,962,961 - SMc03969 0.44 +1.6 2,962,961 - SMc03969 0.44 +0.7 2,963,046 + SMc03969 0.55 -4.1 2,963,047 - SMc03969 0.55 -3.2 2,963,047 - SMc03969 0.55 +1.3 2,963,187 - SMc03969 0.74 +0.5 2,963,424 - +2.6 2,963,424 - -2.3 2,963,425 + +1.1 2,963,425 + -1.2 2,963,425 + +0.5 2,963,426 - -0.9 2,963,426 - -0.7
Or see this region's nucleotide sequence