Strain Fitness in Sinorhizobium meliloti 1021 around SMc03857

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03856 and SMc03857 are separated by 384 nucleotidesSMc03857 and SMc03858 are separated by 12 nucleotidesSMc03858 and SMc03859 are separated by 38 nucleotidesSMc03859 and SMc03860 are separated by 135 nucleotides SMc03856: SMc03856 - diaminopimelate epimerase, at 3,521,161 to 3,522,081 SMc03856 SMc03857: SMc03857 - signal recognition particle protein, at 3,522,466 to 3,524,007 SMc03857 SMc03858: SMc03858 - chorismate mutase, at 3,524,020 to 3,524,355 SMc03858 SMc03859: SMc03859 - 30S ribosomal protein S16, at 3,524,394 to 3,524,768 SMc03859 SMc03860: SMc03860 - 16S rRNA-processing protein RimM, at 3,524,904 to 3,525,467 SMc03860 Position (kb) 3522 3523 3524 3525Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3522.123 kb on - strandat 3522.123 kb on - strandat 3522.123 kb on - strandat 3522.147 kb on - strandat 3522.323 kb on + strandat 3524.824 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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3,522,123 - +3.2
3,522,123 - +1.4
3,522,123 - -2.5
3,522,147 - -0.2
3,522,323 + +0.1
3,524,824 + -0.9

Or see this region's nucleotide sequence