Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03839 and SMc03840 are separated by 125 nucleotides SMc03840 and SMc03841 are separated by 17 nucleotides SMc03841 and SMc03842 are separated by 44 nucleotides SMc03842 and SMc03843 overlap by 4 nucleotides SMc03843 and SMc03844 are separated by 205 nucleotides
SMc03839: SMc03839 - hypothetical protein, at 3,506,126 to 3,506,863
SMc03839
SMc03840: SMc03840 - acetyltransferase (antibiotic resistance) protein, at 3,506,989 to 3,507,546
SMc03840
SMc03841: SMc03841 - ATP-dependent Clp protease proteolytic subunit, at 3,507,564 to 3,508,181
SMc03841
SMc03842: SMc03842 - hypothetical protein, at 3,508,226 to 3,508,585
SMc03842
SMc03843: SMc03843 - transcriptional regulator, at 3,508,582 to 3,508,896
SMc03843
SMc03844: SMc03844 - hypothetical protein, at 3,509,102 to 3,509,512
SMc03844
Position (kb)
3507
3508
3509 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3506.861 kb on + strand at 3506.861 kb on + strand at 3506.862 kb on - strand at 3506.908 kb on + strand at 3506.957 kb on + strand at 3506.957 kb on + strand at 3507.047 kb on - strand, within SMc03840 at 3507.080 kb on - strand, within SMc03840 at 3507.080 kb on - strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.152 kb on - strand, within SMc03840 at 3507.152 kb on - strand, within SMc03840 at 3507.190 kb on + strand, within SMc03840 at 3507.190 kb on + strand, within SMc03840 at 3507.191 kb on - strand, within SMc03840 at 3507.196 kb on + strand, within SMc03840 at 3507.253 kb on + strand, within SMc03840 at 3507.254 kb on - strand, within SMc03840 at 3507.520 kb on + strand at 3507.535 kb on + strand at 3507.535 kb on + strand at 3507.538 kb on - strand at 3507.538 kb on - strand at 3507.538 kb on - strand at 3507.685 kb on + strand, within SMc03841 at 3507.685 kb on + strand, within SMc03841 at 3507.685 kb on + strand, within SMc03841 at 3507.686 kb on - strand, within SMc03841 at 3507.686 kb on - strand, within SMc03841 at 3507.709 kb on + strand, within SMc03841 at 3507.764 kb on + strand, within SMc03841 at 3507.923 kb on - strand, within SMc03841 at 3507.923 kb on - strand, within SMc03841 at 3507.978 kb on + strand, within SMc03841 at 3507.982 kb on + strand, within SMc03841 at 3507.982 kb on + strand, within SMc03841 at 3507.983 kb on - strand, within SMc03841 at 3507.983 kb on - strand, within SMc03841 at 3508.108 kb on + strand, within SMc03841 at 3508.108 kb on + strand, within SMc03841 at 3508.108 kb on + strand, within SMc03841 at 3508.108 kb on + strand, within SMc03841 at 3508.109 kb on - strand, within SMc03841 at 3508.109 kb on - strand, within SMc03841 at 3508.109 kb on - strand, within SMc03841 at 3508.154 kb on + strand at 3508.155 kb on - strand at 3508.312 kb on + strand, within SMc03842 at 3508.313 kb on - strand, within SMc03842 at 3508.319 kb on - strand, within SMc03842 at 3508.319 kb on - strand, within SMc03842 at 3508.537 kb on - strand, within SMc03842 at 3508.646 kb on + strand, within SMc03843 at 3508.647 kb on - strand, within SMc03843 at 3508.698 kb on - strand at 3508.698 kb on - strand, within SMc03843 at 3508.744 kb on - strand, within SMc03843 at 3508.750 kb on + strand, within SMc03843 at 3508.751 kb on - strand, within SMc03843 at 3508.791 kb on + strand, within SMc03843 at 3508.791 kb on + strand, within SMc03843 at 3508.818 kb on + strand, within SMc03843 at 3508.818 kb on + strand, within SMc03843 at 3508.879 kb on + strand at 3508.879 kb on + strand at 3508.879 kb on + strand at 3508.880 kb on - strand at 3508.986 kb on - strand at 3509.094 kb on + strand at 3509.095 kb on - strand at 3509.095 kb on - strand at 3509.095 kb on - strand at 3509.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 3,506,861 + -0.2 3,506,861 + -2.8 3,506,862 - +0.6 3,506,908 + +0.2 3,506,957 + -0.4 3,506,957 + +1.5 3,507,047 - SMc03840 0.10 -0.7 3,507,080 - SMc03840 0.16 +0.5 3,507,080 - SMc03840 0.16 -0.5 3,507,151 + SMc03840 0.29 -0.0 3,507,151 + SMc03840 0.29 +0.8 3,507,151 + SMc03840 0.29 +0.1 3,507,151 + SMc03840 0.29 -0.7 3,507,151 + SMc03840 0.29 +0.1 3,507,151 + SMc03840 0.29 +0.5 3,507,151 + SMc03840 0.29 -0.4 3,507,152 - SMc03840 0.29 -0.2 3,507,152 - SMc03840 0.29 -0.0 3,507,190 + SMc03840 0.36 -2.2 3,507,190 + SMc03840 0.36 +2.6 3,507,191 - SMc03840 0.36 -0.4 3,507,196 + SMc03840 0.37 +1.0 3,507,253 + SMc03840 0.47 -3.1 3,507,254 - SMc03840 0.47 -0.1 3,507,520 + -1.6 3,507,535 + +2.2 3,507,535 + -1.9 3,507,538 - +0.5 3,507,538 - -2.7 3,507,538 - -2.1 3,507,685 + SMc03841 0.20 -0.7 3,507,685 + SMc03841 0.20 +0.2 3,507,685 + SMc03841 0.20 -1.5 3,507,686 - SMc03841 0.20 +0.1 3,507,686 - SMc03841 0.20 +0.7 3,507,709 + SMc03841 0.23 +0.1 3,507,764 + SMc03841 0.32 +0.2 3,507,923 - SMc03841 0.58 +0.7 3,507,923 - SMc03841 0.58 +1.7 3,507,978 + SMc03841 0.67 -0.2 3,507,982 + SMc03841 0.68 -0.9 3,507,982 + SMc03841 0.68 +1.5 3,507,983 - SMc03841 0.68 -0.3 3,507,983 - SMc03841 0.68 -0.9 3,508,108 + SMc03841 0.88 -0.4 3,508,108 + SMc03841 0.88 +0.6 3,508,108 + SMc03841 0.88 -0.2 3,508,108 + SMc03841 0.88 -0.3 3,508,109 - SMc03841 0.88 -0.1 3,508,109 - SMc03841 0.88 -0.9 3,508,109 - SMc03841 0.88 -0.2 3,508,154 + +0.9 3,508,155 - -0.1 3,508,312 + SMc03842 0.24 +2.3 3,508,313 - SMc03842 0.24 +0.5 3,508,319 - SMc03842 0.26 +2.3 3,508,319 - SMc03842 0.26 -3.5 3,508,537 - SMc03842 0.86 -0.4 3,508,646 + SMc03843 0.20 +0.6 3,508,647 - SMc03843 0.21 +1.3 3,508,698 - +1.5 3,508,698 - SMc03843 0.37 -1.0 3,508,744 - SMc03843 0.51 -0.3 3,508,750 + SMc03843 0.53 +0.9 3,508,751 - SMc03843 0.54 +0.4 3,508,791 + SMc03843 0.66 +0.3 3,508,791 + SMc03843 0.66 -1.0 3,508,818 + SMc03843 0.75 +1.1 3,508,818 + SMc03843 0.75 +0.5 3,508,879 + +1.1 3,508,879 + +0.0 3,508,879 + +0.2 3,508,880 - +0.7 3,508,986 - -0.3 3,509,094 + -0.4 3,509,095 - +0.0 3,509,095 - +1.1 3,509,095 - -0.2 3,509,095 - +0.7
Or see this region's nucleotide sequence