Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03001 and SMc03002 are separated by 10 nucleotides SMc03002 and SMc03003 overlap by 4 nucleotides
SMc03001: SMc03001 - ABC transporter permease, at 698,751 to 699,755
SMc03001
SMc03002: SMc03002 - hypothetical protein, at 699,766 to 700,080
SMc03002
SMc03003: SMc03003 - Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) <small>(from data)</small>, at 700,077 to 701,465
SMc03003
Position (kb) 699
700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 698.889 kb on + strand, within SMc03001 at 699.040 kb on - strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.265 kb on - strand, within SMc03001 at 699.321 kb on + strand, within SMc03001 at 699.363 kb on + strand, within SMc03001 at 699.399 kb on + strand, within SMc03001 at 699.776 kb on - strand at 699.817 kb on + strand, within SMc03002 at 699.818 kb on - strand, within SMc03002 at 699.887 kb on - strand, within SMc03002 at 700.002 kb on + strand, within SMc03002 at 700.106 kb on + strand at 700.255 kb on + strand, within SMc03003 at 700.366 kb on - strand, within SMc03003 at 700.401 kb on + strand, within SMc03003 at 700.401 kb on + strand, within SMc03003 at 700.537 kb on - strand, within SMc03003 at 700.545 kb on + strand, within SMc03003 at 700.546 kb on - strand, within SMc03003 at 700.812 kb on - strand, within SMc03003 at 700.835 kb on - strand, within SMc03003 at 700.974 kb on + strand, within SMc03003 at 701.048 kb on + strand, within SMc03003 at 701.048 kb on + strand, within SMc03003 at 701.049 kb on - strand, within SMc03003 at 701.049 kb on - strand, within SMc03003 at 701.049 kb on - strand, within SMc03003 at 701.049 kb on - strand, within SMc03003
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 698,889 + SMc03001 0.14 -0.4 699,040 - SMc03001 0.29 -0.9 699,264 + SMc03001 0.51 +0.0 699,264 + SMc03001 0.51 -3.6 699,264 + SMc03001 0.51 -0.1 699,264 + SMc03001 0.51 -1.0 699,265 - SMc03001 0.51 +0.0 699,321 + SMc03001 0.57 +0.3 699,363 + SMc03001 0.61 -0.4 699,399 + SMc03001 0.64 +0.7 699,776 - +0.2 699,817 + SMc03002 0.16 -1.3 699,818 - SMc03002 0.17 -1.0 699,887 - SMc03002 0.38 -1.5 700,002 + SMc03002 0.75 +0.4 700,106 + -0.2 700,255 + SMc03003 0.13 -0.9 700,366 - SMc03003 0.21 -0.7 700,401 + SMc03003 0.23 -0.3 700,401 + SMc03003 0.23 +0.2 700,537 - SMc03003 0.33 -0.9 700,545 + SMc03003 0.34 +2.4 700,546 - SMc03003 0.34 -2.9 700,812 - SMc03003 0.53 -0.3 700,835 - SMc03003 0.55 -0.1 700,974 + SMc03003 0.65 +0.7 701,048 + SMc03003 0.70 -0.4 701,048 + SMc03003 0.70 +0.3 701,049 - SMc03003 0.70 -1.8 701,049 - SMc03003 0.70 +0.2 701,049 - SMc03003 0.70 +0.9 701,049 - SMc03003 0.70 -1.4
Or see this region's nucleotide sequence