Strain Fitness in Sinorhizobium meliloti 1021 around SMc02891

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02890 and SMc02891 are separated by 11 nucleotidesSMc02891 and SMc02892 are separated by 86 nucleotides SMc02890: SMc02890 - outer membrane receptor protein, at 245,554 to 247,554 SMc02890 SMc02891: SMc02891 - oxidoreductase transmembrane protein, at 247,566 to 248,726 SMc02891 SMc02892: SMc02892 - transporter, at 248,813 to 250,291 SMc02892 Position (kb) 247 248 249Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 246.569 kb on - strand, within SMc02890at 246.569 kb on - strand, within SMc02890at 246.581 kb on + strand, within SMc02890at 246.584 kb on - strand, within SMc02890at 246.584 kb on - strand, within SMc02890at 246.655 kb on + strand, within SMc02890at 246.656 kb on - strand, within SMc02890at 246.817 kb on + strand, within SMc02890at 246.865 kb on + strand, within SMc02890at 246.865 kb on + strand, within SMc02890at 246.866 kb on - strand, within SMc02890at 246.919 kb on + strand, within SMc02890at 246.920 kb on - strand, within SMc02890at 246.937 kb on + strand, within SMc02890at 246.937 kb on + strand, within SMc02890at 246.961 kb on + strand, within SMc02890at 246.961 kb on + strand, within SMc02890at 246.961 kb on + strand, within SMc02890at 246.962 kb on - strand, within SMc02890at 247.003 kb on + strand, within SMc02890at 247.006 kb on + strand, within SMc02890at 247.006 kb on + strand, within SMc02890at 247.006 kb on + strand, within SMc02890at 247.006 kb on + strand, within SMc02890at 247.006 kb on + strand, within SMc02890at 247.007 kb on - strand, within SMc02890at 247.007 kb on - strand, within SMc02890at 247.024 kb on + strand, within SMc02890at 247.025 kb on - strand, within SMc02890at 247.025 kb on - strand, within SMc02890at 247.049 kb on - strand, within SMc02890at 247.207 kb on + strand, within SMc02890at 247.265 kb on - strand, within SMc02890at 247.322 kb on - strandat 247.322 kb on - strand, within SMc02890at 247.354 kb on - strand, within SMc02890at 247.459 kb on + strandat 247.459 kb on + strandat 247.459 kb on + strandat 247.460 kb on - strandat 247.468 kb on + strandat 247.489 kb on + strandat 247.489 kb on + strandat 247.501 kb on + strandat 247.571 kb on + strandat 247.571 kb on + strandat 247.571 kb on + strandat 247.691 kb on - strand, within SMc02891at 247.691 kb on - strand, within SMc02891at 247.691 kb on - strand, within SMc02891at 247.691 kb on - strand, within SMc02891at 247.691 kb on - strand, within SMc02891at 247.815 kb on + strand, within SMc02891at 247.816 kb on - strand, within SMc02891at 247.816 kb on - strand, within SMc02891at 247.817 kb on + strand, within SMc02891at 247.817 kb on + strand, within SMc02891at 247.817 kb on + strand, within SMc02891at 247.818 kb on + strand, within SMc02891at 247.818 kb on - strand, within SMc02891at 247.818 kb on - strand, within SMc02891at 247.821 kb on + strand, within SMc02891at 247.822 kb on - strand, within SMc02891at 247.822 kb on - strand, within SMc02891at 247.822 kb on - strand, within SMc02891at 247.822 kb on - strand, within SMc02891at 247.879 kb on + strand, within SMc02891at 248.184 kb on + strand, within SMc02891at 248.468 kb on - strand, within SMc02891at 248.724 kb on + strandat 248.725 kb on - strandat 248.809 kb on + strandat 248.810 kb on - strandat 248.818 kb on + strandat 248.819 kb on - strandat 248.831 kb on + strandat 249.110 kb on - strand, within SMc02892at 249.375 kb on + strand, within SMc02892at 249.375 kb on + strand, within SMc02892at 249.376 kb on - strand, within SMc02892at 249.509 kb on + strand, within SMc02892at 249.600 kb on + strand, within SMc02892at 249.600 kb on + strand, within SMc02892

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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246,569 - SMc02890 0.51 -0.6
246,569 - SMc02890 0.51 -1.1
246,581 + SMc02890 0.51 -0.9
246,584 - SMc02890 0.51 -0.2
246,584 - SMc02890 0.51 -0.1
246,655 + SMc02890 0.55 -0.8
246,656 - SMc02890 0.55 -0.3
246,817 + SMc02890 0.63 +0.5
246,865 + SMc02890 0.66 -1.2
246,865 + SMc02890 0.66 +0.2
246,866 - SMc02890 0.66 -0.5
246,919 + SMc02890 0.68 -0.2
246,920 - SMc02890 0.68 +1.7
246,937 + SMc02890 0.69 +0.3
246,937 + SMc02890 0.69 -0.4
246,961 + SMc02890 0.70 -1.1
246,961 + SMc02890 0.70 -0.3
246,961 + SMc02890 0.70 +1.5
246,962 - SMc02890 0.70 -2.1
247,003 + SMc02890 0.72 -0.6
247,006 + SMc02890 0.73 +2.4
247,006 + SMc02890 0.73 -2.8
247,006 + SMc02890 0.73 +1.4
247,006 + SMc02890 0.73 +0.3
247,006 + SMc02890 0.73 +1.0
247,007 - SMc02890 0.73 -0.1
247,007 - SMc02890 0.73 +0.4
247,024 + SMc02890 0.73 +0.4
247,025 - SMc02890 0.74 +0.6
247,025 - SMc02890 0.74 -2.0
247,049 - SMc02890 0.75 +0.9
247,207 + SMc02890 0.83 +0.4
247,265 - SMc02890 0.86 +1.5
247,322 - -0.6
247,322 - SMc02890 0.88 -0.1
247,354 - SMc02890 0.90 -0.1
247,459 + +0.9
247,459 + -1.4
247,459 + +0.4
247,460 - -0.0
247,468 + -0.0
247,489 + +0.9
247,489 + -0.5
247,501 + +0.7
247,571 + -0.7
247,571 + -2.0
247,571 + -2.6
247,691 - SMc02891 0.11 -0.0
247,691 - SMc02891 0.11 -0.8
247,691 - SMc02891 0.11 +0.3
247,691 - SMc02891 0.11 +0.2
247,691 - SMc02891 0.11 -0.7
247,815 + SMc02891 0.21 -0.4
247,816 - SMc02891 0.22 +0.1
247,816 - SMc02891 0.22 -0.2
247,817 + SMc02891 0.22 -0.1
247,817 + SMc02891 0.22 -1.1
247,817 + SMc02891 0.22 +0.1
247,818 + SMc02891 0.22 +2.2
247,818 - SMc02891 0.22 +1.9
247,818 - SMc02891 0.22 +0.9
247,821 + SMc02891 0.22 +0.6
247,822 - SMc02891 0.22 +0.6
247,822 - SMc02891 0.22 +0.1
247,822 - SMc02891 0.22 +0.7
247,822 - SMc02891 0.22 +0.7
247,879 + SMc02891 0.27 +0.8
248,184 + SMc02891 0.53 +1.7
248,468 - SMc02891 0.78 -0.2
248,724 + +0.6
248,725 - -0.0
248,809 + -0.1
248,810 - -0.2
248,818 + +1.4
248,819 - +1.7
248,831 + -0.1
249,110 - SMc02892 0.20 -0.4
249,375 + SMc02892 0.38 -0.8
249,375 + SMc02892 0.38 -2.4
249,376 - SMc02892 0.38 +2.8
249,509 + SMc02892 0.47 +0.3
249,600 + SMc02892 0.53 +0.4
249,600 + SMc02892 0.53 -2.3

Or see this region's nucleotide sequence