Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02863 and SMc02864 are separated by 38 nucleotides SMc02864 and SMc02865 are separated by 7 nucleotides SMc02865 and SMc02866 overlap by 8 nucleotides
SMc02863: SMc02863 - recombination protein F, at 216,797 to 217,921
SMc02863
SMc02864: SMc02864 - molybdopterin biosynthesis protein MoeB, at 217,960 to 218,724
SMc02864
SMc02865: SMc02865 - acetyltransferase, at 218,732 to 219,202
SMc02865
SMc02866: SMc02866 - transcriptional regulator, at 219,195 to 219,845
SMc02866
Position (kb) 217
218
219 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 217.157 kb on - strand, within SMc02863 at 217.536 kb on - strand, within SMc02863 at 217.723 kb on + strand, within SMc02863 at 217.724 kb on - strand, within SMc02863 at 217.724 kb on - strand, within SMc02863 at 217.724 kb on - strand, within SMc02863 at 217.886 kb on + strand at 217.886 kb on + strand at 217.886 kb on + strand at 218.332 kb on + strand, within SMc02864 at 218.332 kb on + strand, within SMc02864 at 218.333 kb on - strand, within SMc02864 at 218.367 kb on + strand, within SMc02864 at 218.375 kb on - strand, within SMc02864 at 218.570 kb on + strand, within SMc02864 at 218.669 kb on - strand at 218.669 kb on - strand at 218.960 kb on + strand, within SMc02865 at 218.961 kb on - strand, within SMc02865 at 218.961 kb on - strand, within SMc02865 at 219.007 kb on - strand, within SMc02865 at 219.497 kb on - strand, within SMc02866 at 219.703 kb on + strand, within SMc02866
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 217,157 - SMc02863 0.32 +0.9 217,536 - SMc02863 0.66 +0.1 217,723 + SMc02863 0.82 -1.9 217,724 - SMc02863 0.82 -0.7 217,724 - SMc02863 0.82 +0.3 217,724 - SMc02863 0.82 +0.1 217,886 + -0.2 217,886 + -1.5 217,886 + -0.3 218,332 + SMc02864 0.49 +0.1 218,332 + SMc02864 0.49 -1.8 218,333 - SMc02864 0.49 -1.4 218,367 + SMc02864 0.53 +4.7 218,375 - SMc02864 0.54 +1.3 218,570 + SMc02864 0.80 +0.3 218,669 - +0.2 218,669 - -1.0 218,960 + SMc02865 0.48 +0.8 218,961 - SMc02865 0.49 +0.4 218,961 - SMc02865 0.49 -1.6 219,007 - SMc02865 0.58 -1.9 219,497 - SMc02866 0.46 -0.8 219,703 + SMc02866 0.78 -1.0
Or see this region's nucleotide sequence