Strain Fitness in Sinorhizobium meliloti 1021 around SMc02695

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02693 and SMc02694 are separated by 55 nucleotidesSMc02694 and SMc02695 are separated by 230 nucleotidesSMc02695 and SMc02696 are separated by 472 nucleotidesSMc02696 and SMc02697 overlap by 4 nucleotides SMc02693: SMc02693 - peptidyl-tRNA hydrolase, at 2,543,265 to 2,543,984 SMc02693 SMc02694: SMc02694 - ATP-dependent Clp protease adaptor, at 2,544,040 to 2,544,345 SMc02694 SMc02695: SMc02695 - GTP-dependent nucleic acid-binding protein EngD, at 2,544,576 to 2,545,679 SMc02695 SMc02696: SMc02696 - hypothetical protein, at 2,546,152 to 2,546,607 SMc02696 SMc02697: SMc02697 - hypothetical protein, at 2,546,604 to 2,547,074 SMc02697 Position (kb) 2544 2545 2546Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2543.886 kb on - strand, within SMc02693at 2543.888 kb on - strand, within SMc02693at 2543.939 kb on + strandat 2543.982 kb on + strandat 2544.281 kb on + strand, within SMc02694at 2544.282 kb on - strand, within SMc02694at 2544.328 kb on + strandat 2544.349 kb on + strandat 2544.349 kb on + strandat 2544.538 kb on - strandat 2544.538 kb on - strandat 2544.673 kb on - strandat 2544.791 kb on - strand, within SMc02695at 2545.194 kb on + strand, within SMc02695at 2545.347 kb on + strand, within SMc02695at 2545.407 kb on + strand, within SMc02695at 2545.431 kb on + strand, within SMc02695at 2545.432 kb on - strand, within SMc02695at 2545.557 kb on + strand, within SMc02695at 2545.558 kb on - strand, within SMc02695at 2545.566 kb on + strand, within SMc02695at 2545.566 kb on + strand, within SMc02695at 2545.567 kb on - strand, within SMc02695at 2545.567 kb on - strand, within SMc02695at 2545.567 kb on - strand, within SMc02695at 2545.567 kb on - strand, within SMc02695at 2545.567 kb on - strand, within SMc02695at 2545.568 kb on + strand, within SMc02695at 2545.633 kb on - strandat 2545.673 kb on + strandat 2545.673 kb on + strandat 2545.674 kb on - strandat 2545.674 kb on - strandat 2545.677 kb on + strandat 2545.677 kb on + strandat 2545.677 kb on + strandat 2545.677 kb on + strandat 2545.678 kb on - strandat 2545.903 kb on + strandat 2545.937 kb on + strandat 2545.937 kb on + strandat 2545.937 kb on + strandat 2545.938 kb on - strandat 2545.938 kb on - strandat 2545.938 kb on - strandat 2546.092 kb on + strandat 2546.093 kb on - strandat 2546.109 kb on + strandat 2546.158 kb on + strandat 2546.259 kb on + strand, within SMc02696at 2546.260 kb on - strand, within SMc02696at 2546.260 kb on - strand, within SMc02696at 2546.260 kb on - strand, within SMc02696at 2546.260 kb on - strand, within SMc02696at 2546.439 kb on + strand, within SMc02696at 2546.440 kb on - strand, within SMc02696at 2546.559 kb on - strand, within SMc02696at 2546.625 kb on + strandat 2546.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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2,543,886 - SMc02693 0.86 -1.4
2,543,888 - SMc02693 0.87 -0.5
2,543,939 + -0.8
2,543,982 + +1.5
2,544,281 + SMc02694 0.79 +0.0
2,544,282 - SMc02694 0.79 -1.4
2,544,328 + -1.3
2,544,349 + +0.8
2,544,349 + +1.0
2,544,538 - +0.1
2,544,538 - +1.3
2,544,673 - +2.5
2,544,791 - SMc02695 0.19 +0.4
2,545,194 + SMc02695 0.56 +1.7
2,545,347 + SMc02695 0.70 +1.8
2,545,407 + SMc02695 0.75 +2.9
2,545,431 + SMc02695 0.77 +2.4
2,545,432 - SMc02695 0.78 +0.3
2,545,557 + SMc02695 0.89 +2.9
2,545,558 - SMc02695 0.89 +3.9
2,545,566 + SMc02695 0.90 +2.6
2,545,566 + SMc02695 0.90 +3.6
2,545,567 - SMc02695 0.90 +3.1
2,545,567 - SMc02695 0.90 +2.1
2,545,567 - SMc02695 0.90 +3.1
2,545,567 - SMc02695 0.90 +2.2
2,545,567 - SMc02695 0.90 +2.6
2,545,568 + SMc02695 0.90 +2.9
2,545,633 - +3.2
2,545,673 + +0.6
2,545,673 + +0.9
2,545,674 - -0.0
2,545,674 - +0.0
2,545,677 + +0.6
2,545,677 + +1.6
2,545,677 + -0.0
2,545,677 + +0.1
2,545,678 - -0.8
2,545,903 + -1.5
2,545,937 + -1.4
2,545,937 + +0.3
2,545,937 + -0.0
2,545,938 - -1.1
2,545,938 - -0.2
2,545,938 - -0.2
2,546,092 + -0.7
2,546,093 - +0.8
2,546,109 + -3.8
2,546,158 + -2.3
2,546,259 + SMc02696 0.23 -3.6
2,546,260 - SMc02696 0.24 -0.4
2,546,260 - SMc02696 0.24 +0.3
2,546,260 - SMc02696 0.24 -0.8
2,546,260 - SMc02696 0.24 -0.8
2,546,439 + SMc02696 0.63 -0.3
2,546,440 - SMc02696 0.63 -1.3
2,546,559 - SMc02696 0.89 -0.1
2,546,625 + +0.0
2,546,626 - +0.6

Or see this region's nucleotide sequence