Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02693 and SMc02694 are separated by 55 nucleotides SMc02694 and SMc02695 are separated by 230 nucleotides SMc02695 and SMc02696 are separated by 472 nucleotides SMc02696 and SMc02697 overlap by 4 nucleotides
SMc02693: SMc02693 - peptidyl-tRNA hydrolase, at 2,543,265 to 2,543,984
SMc02693
SMc02694: SMc02694 - ATP-dependent Clp protease adaptor, at 2,544,040 to 2,544,345
SMc02694
SMc02695: SMc02695 - GTP-dependent nucleic acid-binding protein EngD, at 2,544,576 to 2,545,679
SMc02695
SMc02696: SMc02696 - hypothetical protein, at 2,546,152 to 2,546,607
SMc02696
SMc02697: SMc02697 - hypothetical protein, at 2,546,604 to 2,547,074
SMc02697
Position (kb)
2544
2545
2546 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2543.886 kb on - strand, within SMc02693 at 2543.888 kb on - strand, within SMc02693 at 2543.939 kb on + strand at 2543.982 kb on + strand at 2544.281 kb on + strand, within SMc02694 at 2544.282 kb on - strand, within SMc02694 at 2544.328 kb on + strand at 2544.349 kb on + strand at 2544.349 kb on + strand at 2544.538 kb on - strand at 2544.538 kb on - strand at 2544.673 kb on - strand at 2544.791 kb on - strand, within SMc02695 at 2545.194 kb on + strand, within SMc02695 at 2545.347 kb on + strand, within SMc02695 at 2545.407 kb on + strand, within SMc02695 at 2545.431 kb on + strand, within SMc02695 at 2545.432 kb on - strand, within SMc02695 at 2545.557 kb on + strand, within SMc02695 at 2545.558 kb on - strand, within SMc02695 at 2545.566 kb on + strand, within SMc02695 at 2545.566 kb on + strand, within SMc02695 at 2545.567 kb on - strand, within SMc02695 at 2545.567 kb on - strand, within SMc02695 at 2545.567 kb on - strand, within SMc02695 at 2545.567 kb on - strand, within SMc02695 at 2545.567 kb on - strand, within SMc02695 at 2545.568 kb on + strand, within SMc02695 at 2545.633 kb on - strand at 2545.673 kb on + strand at 2545.673 kb on + strand at 2545.674 kb on - strand at 2545.674 kb on - strand at 2545.677 kb on + strand at 2545.677 kb on + strand at 2545.677 kb on + strand at 2545.677 kb on + strand at 2545.678 kb on - strand at 2545.903 kb on + strand at 2545.937 kb on + strand at 2545.937 kb on + strand at 2545.937 kb on + strand at 2545.938 kb on - strand at 2545.938 kb on - strand at 2545.938 kb on - strand at 2546.092 kb on + strand at 2546.093 kb on - strand at 2546.109 kb on + strand at 2546.158 kb on + strand at 2546.259 kb on + strand, within SMc02696 at 2546.260 kb on - strand, within SMc02696 at 2546.260 kb on - strand, within SMc02696 at 2546.260 kb on - strand, within SMc02696 at 2546.260 kb on - strand, within SMc02696 at 2546.439 kb on + strand, within SMc02696 at 2546.440 kb on - strand, within SMc02696 at 2546.559 kb on - strand, within SMc02696 at 2546.625 kb on + strand at 2546.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 2,543,886 - SMc02693 0.86 -1.4 2,543,888 - SMc02693 0.87 -0.5 2,543,939 + -0.8 2,543,982 + +1.5 2,544,281 + SMc02694 0.79 +0.0 2,544,282 - SMc02694 0.79 -1.4 2,544,328 + -1.3 2,544,349 + +0.8 2,544,349 + +1.0 2,544,538 - +0.1 2,544,538 - +1.3 2,544,673 - +2.5 2,544,791 - SMc02695 0.19 +0.4 2,545,194 + SMc02695 0.56 +1.7 2,545,347 + SMc02695 0.70 +1.8 2,545,407 + SMc02695 0.75 +2.9 2,545,431 + SMc02695 0.77 +2.4 2,545,432 - SMc02695 0.78 +0.3 2,545,557 + SMc02695 0.89 +2.9 2,545,558 - SMc02695 0.89 +3.9 2,545,566 + SMc02695 0.90 +2.6 2,545,566 + SMc02695 0.90 +3.6 2,545,567 - SMc02695 0.90 +3.1 2,545,567 - SMc02695 0.90 +2.1 2,545,567 - SMc02695 0.90 +3.1 2,545,567 - SMc02695 0.90 +2.2 2,545,567 - SMc02695 0.90 +2.6 2,545,568 + SMc02695 0.90 +2.9 2,545,633 - +3.2 2,545,673 + +0.6 2,545,673 + +0.9 2,545,674 - -0.0 2,545,674 - +0.0 2,545,677 + +0.6 2,545,677 + +1.6 2,545,677 + -0.0 2,545,677 + +0.1 2,545,678 - -0.8 2,545,903 + -1.5 2,545,937 + -1.4 2,545,937 + +0.3 2,545,937 + -0.0 2,545,938 - -1.1 2,545,938 - -0.2 2,545,938 - -0.2 2,546,092 + -0.7 2,546,093 - +0.8 2,546,109 + -3.8 2,546,158 + -2.3 2,546,259 + SMc02696 0.23 -3.6 2,546,260 - SMc02696 0.24 -0.4 2,546,260 - SMc02696 0.24 +0.3 2,546,260 - SMc02696 0.24 -0.8 2,546,260 - SMc02696 0.24 -0.8 2,546,439 + SMc02696 0.63 -0.3 2,546,440 - SMc02696 0.63 -1.3 2,546,559 - SMc02696 0.89 -0.1 2,546,625 + +0.0 2,546,626 - +0.6
Or see this region's nucleotide sequence