Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02260 and SMc02261 are separated by 189 nucleotides SMc02261 and SMc02262 are separated by 23 nucleotides
SMc02260: SMc02260 - ABC transporter ATP-binding protein, at 624,952 to 625,806
SMc02260
SMc02261: SMc02261 - transcriptional regulator, at 625,996 to 626,610
SMc02261
SMc02262: SMc02262 - aminotransferase, at 626,634 to 627,824
SMc02262
Position (kb) 625
626
627 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 625.277 kb on + strand, within SMc02260 at 625.295 kb on + strand, within SMc02260 at 625.296 kb on - strand, within SMc02260 at 625.360 kb on + strand, within SMc02260 at 625.871 kb on + strand at 626.188 kb on + strand, within SMc02261 at 626.380 kb on + strand, within SMc02261 at 626.381 kb on - strand, within SMc02261 at 626.609 kb on - strand at 626.640 kb on + strand at 626.829 kb on + strand, within SMc02262 at 626.871 kb on + strand, within SMc02262 at 627.005 kb on - strand, within SMc02262 at 627.015 kb on + strand, within SMc02262 at 627.015 kb on + strand, within SMc02262 at 627.015 kb on + strand, within SMc02262 at 627.016 kb on - strand, within SMc02262 at 627.147 kb on - strand, within SMc02262 at 627.147 kb on - strand, within SMc02262 at 627.247 kb on + strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.250 kb on - strand, within SMc02262 at 627.469 kb on - strand, within SMc02262 at 627.594 kb on - strand, within SMc02262
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 625,277 + SMc02260 0.38 +1.8 625,295 + SMc02260 0.40 -2.7 625,296 - SMc02260 0.40 -1.2 625,360 + SMc02260 0.48 -1.8 625,871 + +0.4 626,188 + SMc02261 0.31 +0.4 626,380 + SMc02261 0.62 +0.4 626,381 - SMc02261 0.63 -0.0 626,609 - -1.2 626,640 + -0.7 626,829 + SMc02262 0.16 -0.8 626,871 + SMc02262 0.20 -0.7 627,005 - SMc02262 0.31 -0.3 627,015 + SMc02262 0.32 +1.2 627,015 + SMc02262 0.32 -2.0 627,015 + SMc02262 0.32 -0.8 627,016 - SMc02262 0.32 -3.1 627,147 - SMc02262 0.43 -1.1 627,147 - SMc02262 0.43 -0.1 627,247 + SMc02262 0.51 +0.5 627,248 - SMc02262 0.52 +0.3 627,248 - SMc02262 0.52 -0.3 627,248 - SMc02262 0.52 -0.4 627,248 - SMc02262 0.52 +1.5 627,248 - SMc02262 0.52 +0.3 627,249 + SMc02262 0.52 -1.1 627,249 + SMc02262 0.52 +0.6 627,249 + SMc02262 0.52 -1.9 627,249 + SMc02262 0.52 -0.3 627,249 + SMc02262 0.52 -3.0 627,249 + SMc02262 0.52 +1.6 627,250 - SMc02262 0.52 +0.4 627,469 - SMc02262 0.70 -0.2 627,594 - SMc02262 0.81 -0.8
Or see this region's nucleotide sequence