Strain Fitness in Sinorhizobium meliloti 1021 around SMc02098

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02100 and SMc02099 are separated by 183 nucleotidesSMc02099 and SMc02098 are separated by 51 nucleotidesSMc02098 and SMc02097 are separated by 36 nucleotidesSMc02097 and SMc02096 overlap by 1 nucleotides SMc02100: SMc02100 - elongation factor Ts, at 1,608,777 to 1,609,700 SMc02100 SMc02099: SMc02099 - uridylate kinase, at 1,609,884 to 1,610,606 SMc02099 SMc02098: SMc02098 - ribosome recycling factor, at 1,610,658 to 1,611,218 SMc02098 SMc02097: SMc02097 - UDP pyrophosphate synthase, at 1,611,255 to 1,611,998 SMc02097 SMc02096: SMc02096 - phosphatidate cytidylyltransferase, at 1,611,998 to 1,612,831 SMc02096 Position (kb) 1610 1611 1612Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1609.804 kb on + strandat 1609.804 kb on + strandat 1609.827 kb on + strandat 1609.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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1,609,804 + -1.1
1,609,804 + -3.8
1,609,827 + -0.7
1,609,868 + -3.2

Or see this region's nucleotide sequence