Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01640 and SMc01641 overlap by 4 nucleotides SMc01641 and SMc01642 are separated by 340 nucleotides
SMc01640: SMc01640 - acyl-COA synthetase, at 2,433,628 to 2,435,691
SMc01640
SMc01641: SMc01641 - carnitinyl-CoA dehydratase, at 2,435,688 to 2,436,479
SMc01641
SMc01642: SMc01642 - periplasmic binding protein, at 2,436,820 to 2,438,409
SMc01642
Position (kb)
2435
2436
2437 Strain fitness (log2 ratio)
-2
-1
0
1 at 2435.466 kb on + strand, within SMc01640 at 2435.552 kb on + strand at 2435.553 kb on - strand at 2435.553 kb on - strand at 2435.578 kb on + strand at 2435.578 kb on + strand at 2435.578 kb on + strand at 2435.579 kb on - strand at 2435.579 kb on - strand at 2435.626 kb on - strand at 2435.628 kb on - strand at 2435.931 kb on + strand, within SMc01641 at 2435.932 kb on - strand, within SMc01641 at 2436.148 kb on - strand, within SMc01641 at 2436.153 kb on - strand, within SMc01641 at 2436.405 kb on + strand at 2436.406 kb on - strand at 2436.406 kb on - strand at 2436.406 kb on - strand at 2436.483 kb on - strand at 2436.623 kb on + strand at 2436.624 kb on - strand at 2436.644 kb on + strand at 2436.645 kb on - strand at 2436.758 kb on + strand at 2436.771 kb on + strand at 2436.772 kb on - strand at 2436.772 kb on - strand at 2436.829 kb on + strand at 2436.830 kb on - strand at 2436.838 kb on + strand at 2436.839 kb on - strand at 2436.839 kb on - strand at 2436.839 kb on - strand at 2436.931 kb on - strand at 2437.448 kb on - strand, within SMc01642 at 2437.448 kb on - strand, within SMc01642 at 2437.448 kb on - strand, within SMc01642 at 2437.448 kb on - strand, within SMc01642
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 2,435,466 + SMc01640 0.89 -0.1 2,435,552 + +0.4 2,435,553 - +0.8 2,435,553 - -0.5 2,435,578 + -0.1 2,435,578 + +1.6 2,435,578 + -0.8 2,435,579 - +0.1 2,435,579 - +0.0 2,435,626 - +0.6 2,435,628 - +0.2 2,435,931 + SMc01641 0.31 -1.1 2,435,932 - SMc01641 0.31 -0.7 2,436,148 - SMc01641 0.58 -0.8 2,436,153 - SMc01641 0.59 -0.6 2,436,405 + -0.2 2,436,406 - +0.7 2,436,406 - -0.7 2,436,406 - -0.4 2,436,483 - +0.7 2,436,623 + -0.4 2,436,624 - +0.9 2,436,644 + -0.4 2,436,645 - -0.1 2,436,758 + -0.1 2,436,771 + +0.8 2,436,772 - +1.2 2,436,772 - +1.0 2,436,829 + +0.0 2,436,830 - +0.1 2,436,838 + +0.8 2,436,839 - -0.0 2,436,839 - +1.0 2,436,839 - -0.3 2,436,931 - -0.1 2,437,448 - SMc01642 0.39 -0.1 2,437,448 - SMc01642 0.39 -2.1 2,437,448 - SMc01642 0.39 +0.7 2,437,448 - SMc01642 0.39 +0.5
Or see this region's nucleotide sequence