Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01350 and SMc01349 are separated by 2 nucleotides SMc01349 and SMc01348 are separated by 161 nucleotides SMc01348 and SMc01347 are separated by 118 nucleotides
SMc01350: SMc01350 - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 1,431,144 to 1,432,694
SMc01350
SMc01349: SMc01349 - hypothetical protein, at 1,432,697 to 1,433,194
SMc01349
SMc01348: SMc01348 - NADH dehydrogenase, at 1,433,356 to 1,433,757
SMc01348
SMc01347: SMc01347 - hypothetical protein, at 1,433,876 to 1,434,328
SMc01347
Position (kb)
1432
1433
1434 Strain fitness (log2 ratio)
-1
0
1
2 at 1432.775 kb on + strand, within SMc01349 at 1432.775 kb on + strand, within SMc01349 at 1432.788 kb on - strand, within SMc01349 at 1432.788 kb on - strand, within SMc01349 at 1432.967 kb on + strand, within SMc01349 at 1432.967 kb on + strand, within SMc01349 at 1432.967 kb on + strand, within SMc01349 at 1432.967 kb on + strand, within SMc01349 at 1432.968 kb on - strand, within SMc01349 at 1432.968 kb on - strand, within SMc01349 at 1432.968 kb on - strand, within SMc01349 at 1432.968 kb on - strand, within SMc01349 at 1432.968 kb on - strand, within SMc01349 at 1433.614 kb on + strand, within SMc01348 at 1433.615 kb on - strand, within SMc01348 at 1433.732 kb on - strand at 1433.732 kb on - strand at 1434.059 kb on + strand, within SMc01347 at 1434.059 kb on + strand, within SMc01347 at 1434.060 kb on - strand, within SMc01347 at 1434.060 kb on - strand, within SMc01347 at 1434.060 kb on - strand, within SMc01347 at 1434.062 kb on - strand, within SMc01347
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 1,432,775 + SMc01349 0.16 +0.8 1,432,775 + SMc01349 0.16 +0.1 1,432,788 - SMc01349 0.18 +0.7 1,432,788 - SMc01349 0.18 +0.4 1,432,967 + SMc01349 0.54 +1.1 1,432,967 + SMc01349 0.54 +1.6 1,432,967 + SMc01349 0.54 +2.5 1,432,967 + SMc01349 0.54 +0.3 1,432,968 - SMc01349 0.54 +1.6 1,432,968 - SMc01349 0.54 +1.3 1,432,968 - SMc01349 0.54 -0.6 1,432,968 - SMc01349 0.54 +1.2 1,432,968 - SMc01349 0.54 +0.3 1,433,614 + SMc01348 0.64 +1.5 1,433,615 - SMc01348 0.64 +1.9 1,433,732 - +0.8 1,433,732 - +1.7 1,434,059 + SMc01347 0.40 -0.4 1,434,059 + SMc01347 0.40 +0.9 1,434,060 - SMc01347 0.41 +1.4 1,434,060 - SMc01347 0.41 -1.2 1,434,060 - SMc01347 0.41 -0.2 1,434,062 - SMc01347 0.41 -0.4
Or see this region's nucleotide sequence