Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00866 and SMc00865 are separated by 178 nucleotides SMc00865 and SMc00864 are separated by 137 nucleotides SMc00864 and SMc00863 are separated by 454 nucleotides
SMc00866: SMc00866 - hypothetical protein, at 920,391 to 921,548
SMc00866
SMc00865: SMc00865 - hypothetical protein, at 921,727 to 922,278
SMc00865
SMc00864: SMc00864 - hypothetical protein, at 922,416 to 923,495
SMc00864
SMc00863: SMc00863 - molybdenum cofactor biosynthesis protein B, at 923,950 to 924,492
SMc00863
Position (kb) 922
923
924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 921.694 kb on - strand at 921.694 kb on - strand at 921.717 kb on - strand at 921.727 kb on - strand at 921.827 kb on + strand, within SMc00865 at 921.828 kb on - strand, within SMc00865 at 921.830 kb on + strand, within SMc00865 at 921.831 kb on - strand, within SMc00865 at 922.057 kb on - strand, within SMc00865 at 922.057 kb on - strand, within SMc00865 at 922.057 kb on - strand, within SMc00865 at 922.276 kb on + strand at 922.326 kb on + strand at 922.327 kb on - strand at 922.331 kb on + strand at 922.332 kb on - strand at 922.522 kb on + strand at 922.522 kb on + strand at 922.523 kb on - strand at 922.523 kb on - strand at 922.771 kb on + strand, within SMc00864 at 922.827 kb on + strand, within SMc00864 at 922.828 kb on - strand, within SMc00864 at 922.829 kb on + strand, within SMc00864 at 922.829 kb on + strand, within SMc00864 at 922.830 kb on - strand, within SMc00864 at 922.830 kb on - strand, within SMc00864 at 922.862 kb on - strand, within SMc00864 at 922.907 kb on + strand, within SMc00864 at 922.908 kb on - strand, within SMc00864 at 922.908 kb on - strand, within SMc00864 at 923.074 kb on + strand, within SMc00864 at 923.074 kb on + strand, within SMc00864 at 923.177 kb on - strand, within SMc00864 at 923.186 kb on + strand, within SMc00864 at 923.187 kb on - strand, within SMc00864 at 923.420 kb on - strand at 923.420 kb on - strand at 923.506 kb on + strand at 923.640 kb on + strand at 923.793 kb on + strand at 923.793 kb on + strand at 923.793 kb on + strand at 923.854 kb on - strand at 924.017 kb on + strand, within SMc00863 at 924.314 kb on + strand, within SMc00863 at 924.314 kb on + strand, within SMc00863 at 924.314 kb on + strand, within SMc00863 at 924.314 kb on + strand, within SMc00863 at 924.377 kb on - strand, within SMc00863
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 921,694 - -0.5 921,694 - -2.0 921,717 - -0.8 921,727 - -0.4 921,827 + SMc00865 0.18 +1.1 921,828 - SMc00865 0.18 +0.2 921,830 + SMc00865 0.19 +1.7 921,831 - SMc00865 0.19 +1.8 922,057 - SMc00865 0.60 +0.8 922,057 - SMc00865 0.60 +0.5 922,057 - SMc00865 0.60 -0.5 922,276 + +0.6 922,326 + -1.9 922,327 - -2.5 922,331 + -3.3 922,332 - -0.0 922,522 + +0.3 922,522 + +0.2 922,523 - +1.3 922,523 - -1.0 922,771 + SMc00864 0.33 +0.3 922,827 + SMc00864 0.38 +0.8 922,828 - SMc00864 0.38 -0.4 922,829 + SMc00864 0.38 -0.8 922,829 + SMc00864 0.38 +0.5 922,830 - SMc00864 0.38 -1.3 922,830 - SMc00864 0.38 +1.0 922,862 - SMc00864 0.41 -0.5 922,907 + SMc00864 0.45 +0.2 922,908 - SMc00864 0.46 +0.1 922,908 - SMc00864 0.46 -0.5 923,074 + SMc00864 0.61 -0.0 923,074 + SMc00864 0.61 -3.5 923,177 - SMc00864 0.70 +0.4 923,186 + SMc00864 0.71 -0.2 923,187 - SMc00864 0.71 -1.5 923,420 - -1.3 923,420 - -0.9 923,506 + -0.9 923,640 + -0.0 923,793 + -2.2 923,793 + -1.6 923,793 + -2.1 923,854 - +0.4 924,017 + SMc00863 0.12 +0.0 924,314 + SMc00863 0.67 -0.2 924,314 + SMc00863 0.67 +1.1 924,314 + SMc00863 0.67 +0.6 924,314 + SMc00863 0.67 -1.7 924,377 - SMc00863 0.79 +0.4
Or see this region's nucleotide sequence