Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00855 and SMc00854 are separated by 0 nucleotides SMc00854 and SMc00853 are separated by 227 nucleotides SMc00853 and SMc00852 are separated by 119 nucleotides
SMc00855: SMc00855 - glycyl-tRNA synthetase subunit alpha, at 931,119 to 932,054
SMc00855
SMc00854: SMc00854 - hypothetical protein, at 932,055 to 932,300
SMc00854
SMc00853: SMc00853 - hypothetical protein, at 932,528 to 933,076
SMc00853
SMc00852: SMc00852 - transmembrane signal peptide protein, at 933,196 to 935,130
SMc00852
Position (kb) 932
933
934 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 932.185 kb on + strand, within SMc00854 at 932.186 kb on - strand, within SMc00854 at 932.311 kb on - strand at 932.311 kb on - strand at 932.334 kb on + strand at 932.334 kb on + strand at 932.335 kb on - strand at 932.335 kb on - strand at 932.335 kb on - strand at 932.340 kb on - strand at 932.340 kb on - strand at 932.564 kb on + strand at 932.581 kb on + strand at 932.732 kb on - strand, within SMc00853 at 932.933 kb on + strand, within SMc00853 at 933.024 kb on - strand at 933.074 kb on + strand at 933.107 kb on - strand at 933.283 kb on + strand at 933.379 kb on + strand at 933.379 kb on + strand at 933.379 kb on + strand at 933.479 kb on - strand, within SMc00852 at 933.514 kb on + strand, within SMc00852 at 933.515 kb on - strand, within SMc00852 at 933.571 kb on + strand, within SMc00852 at 933.572 kb on - strand, within SMc00852 at 933.572 kb on - strand, within SMc00852 at 933.572 kb on - strand, within SMc00852 at 933.590 kb on + strand, within SMc00852 at 933.590 kb on + strand, within SMc00852 at 933.619 kb on + strand, within SMc00852 at 933.619 kb on + strand, within SMc00852 at 933.620 kb on - strand, within SMc00852 at 933.620 kb on - strand, within SMc00852 at 933.711 kb on - strand, within SMc00852 at 933.882 kb on + strand, within SMc00852 at 933.949 kb on + strand, within SMc00852 at 933.949 kb on + strand, within SMc00852 at 934.051 kb on + strand, within SMc00852 at 934.051 kb on + strand, within SMc00852 at 934.052 kb on - strand, within SMc00852 at 934.052 kb on - strand, within SMc00852 at 934.052 kb on - strand, within SMc00852
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 932,185 + SMc00854 0.53 -0.6 932,186 - SMc00854 0.53 -0.2 932,311 - +0.8 932,311 - +1.4 932,334 + -0.9 932,334 + -3.4 932,335 - -0.3 932,335 - +2.4 932,335 - +0.9 932,340 - +1.0 932,340 - +0.7 932,564 + +1.6 932,581 + +0.8 932,732 - SMc00853 0.37 +1.3 932,933 + SMc00853 0.74 +0.4 933,024 - +0.3 933,074 + -1.8 933,107 - +0.4 933,283 + -0.3 933,379 + +0.8 933,379 + +1.2 933,379 + +0.4 933,479 - SMc00852 0.15 +0.5 933,514 + SMc00852 0.16 +1.2 933,515 - SMc00852 0.16 +0.5 933,571 + SMc00852 0.19 +1.7 933,572 - SMc00852 0.19 +0.2 933,572 - SMc00852 0.19 -2.2 933,572 - SMc00852 0.19 -0.1 933,590 + SMc00852 0.20 +0.9 933,590 + SMc00852 0.20 +0.3 933,619 + SMc00852 0.22 +0.2 933,619 + SMc00852 0.22 -2.0 933,620 - SMc00852 0.22 -0.1 933,620 - SMc00852 0.22 +0.5 933,711 - SMc00852 0.27 +0.5 933,882 + SMc00852 0.35 +0.2 933,949 + SMc00852 0.39 -0.1 933,949 + SMc00852 0.39 +0.5 934,051 + SMc00852 0.44 -0.5 934,051 + SMc00852 0.44 +0.8 934,052 - SMc00852 0.44 +1.1 934,052 - SMc00852 0.44 +0.4 934,052 - SMc00852 0.44 -0.7
Or see this region's nucleotide sequence