Strain Fitness in Sinorhizobium meliloti 1021 around SMc00403

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00402 and SMc00403 are separated by 154 nucleotidesSMc00403 and SMc00404 are separated by 136 nucleotidesSMc00404 and SMc00405 are separated by 460 nucleotides SMc00402: SMc00402 - signal peptide protein, at 352,658 to 353,938 SMc00402 SMc00403: SMc00403 - NOL1/NOP2/SUN family signature protein, at 354,093 to 355,382 SMc00403 SMc00404: SMc00404 - hypothetical protein, at 355,519 to 355,893 SMc00404 SMc00405: SMc00405 - hypothetical protein, at 356,354 to 357,229 SMc00405 Position (kb) 354 355 356Strain fitness (log2 ratio) -2 -1 0 1 2 3at 353.130 kb on + strand, within SMc00402at 353.278 kb on - strand, within SMc00402at 353.571 kb on + strand, within SMc00402at 353.572 kb on - strand, within SMc00402at 353.586 kb on + strand, within SMc00402at 353.587 kb on - strand, within SMc00402at 353.665 kb on - strand, within SMc00402at 353.802 kb on + strand, within SMc00402at 353.803 kb on - strand, within SMc00402at 353.970 kb on + strandat 353.970 kb on + strandat 353.971 kb on - strandat 353.971 kb on - strandat 354.094 kb on + strandat 354.195 kb on - strandat 354.272 kb on - strand, within SMc00403at 354.317 kb on - strand, within SMc00403at 354.566 kb on + strand, within SMc00403at 354.598 kb on + strand, within SMc00403at 354.617 kb on + strand, within SMc00403at 354.618 kb on - strand, within SMc00403at 354.618 kb on - strand, within SMc00403at 354.670 kb on + strand, within SMc00403at 354.777 kb on + strand, within SMc00403at 354.777 kb on + strand, within SMc00403at 355.151 kb on - strand, within SMc00403at 355.198 kb on + strand, within SMc00403at 355.198 kb on + strand, within SMc00403at 355.198 kb on + strand, within SMc00403at 355.199 kb on - strand, within SMc00403at 355.232 kb on - strand, within SMc00403at 355.449 kb on + strandat 355.449 kb on + strandat 355.453 kb on + strandat 355.453 kb on + strandat 355.453 kb on + strandat 355.454 kb on - strandat 355.454 kb on - strandat 355.454 kb on - strandat 355.454 kb on - strandat 355.454 kb on - strandat 355.454 kb on - strandat 355.454 kb on - strandat 355.538 kb on + strandat 355.538 kb on + strandat 355.776 kb on - strand, within SMc00404at 355.947 kb on - strandat 356.348 kb on - strandat 356.355 kb on + strandat 356.355 kb on + strandat 356.355 kb on + strandat 356.355 kb on + strandat 356.356 kb on - strandat 356.356 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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353,130 + SMc00402 0.37 +0.1
353,278 - SMc00402 0.48 -0.5
353,571 + SMc00402 0.71 +0.9
353,572 - SMc00402 0.71 -0.7
353,586 + SMc00402 0.72 +2.6
353,587 - SMc00402 0.73 -1.9
353,665 - SMc00402 0.79 +0.2
353,802 + SMc00402 0.89 +0.6
353,803 - SMc00402 0.89 +0.3
353,970 + +0.6
353,970 + -0.3
353,971 - +0.5
353,971 - -0.3
354,094 + +1.0
354,195 - +0.7
354,272 - SMc00403 0.14 +3.1
354,317 - SMc00403 0.17 +1.3
354,566 + SMc00403 0.37 +2.9
354,598 + SMc00403 0.39 +2.0
354,617 + SMc00403 0.41 +1.7
354,618 - SMc00403 0.41 +0.1
354,618 - SMc00403 0.41 +1.3
354,670 + SMc00403 0.45 +1.6
354,777 + SMc00403 0.53 +0.3
354,777 + SMc00403 0.53 +1.8
355,151 - SMc00403 0.82 +0.3
355,198 + SMc00403 0.86 +1.2
355,198 + SMc00403 0.86 -0.3
355,198 + SMc00403 0.86 +1.2
355,199 - SMc00403 0.86 +2.4
355,232 - SMc00403 0.88 +0.8
355,449 + +2.1
355,449 + +1.4
355,453 + +1.0
355,453 + +0.1
355,453 + +0.8
355,454 - -0.9
355,454 - +0.1
355,454 - -2.2
355,454 - +0.7
355,454 - -0.9
355,454 - -2.1
355,454 - -2.7
355,538 + -1.5
355,538 + -0.0
355,776 - SMc00404 0.69 -1.3
355,947 - +0.4
356,348 - -0.2
356,355 + -0.7
356,355 + -0.7
356,355 + -0.4
356,355 + -1.4
356,356 - -1.2
356,356 - -0.6

Or see this region's nucleotide sequence