Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00001 and SMc00069 are separated by 23 nucleotides SMc00069 and SMc00002 are separated by 141 nucleotides SMc00002 and SMc00003 are separated by 205 nucleotides
SMc00001: SMc00001 - hypothetical protein, at 982,728 to 983,786
SMc00001
SMc00069: SMc00069 - pyridoxamine 5'-phosphate oxidase, at 983,810 to 984,430
SMc00069
SMc00002: SMc00002 - hypothetical protein, at 984,572 to 985,027
SMc00002
SMc00003: SMc00003 - chaperone protein, at 985,233 to 986,288
SMc00003
Position (kb)
984
985
986 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 983.727 kb on + strand at 983.727 kb on + strand at 983.728 kb on - strand at 983.728 kb on - strand at 984.431 kb on - strand at 984.501 kb on + strand at 984.502 kb on - strand at 984.502 kb on - strand at 984.505 kb on - strand at 984.505 kb on - strand at 984.505 kb on - strand at 984.505 kb on - strand at 984.582 kb on + strand at 984.582 kb on + strand at 984.583 kb on - strand at 984.583 kb on - strand at 984.583 kb on - strand at 984.583 kb on - strand at 984.999 kb on - strand at 984.999 kb on - strand at 984.999 kb on - strand at 985.038 kb on + strand at 985.045 kb on - strand at 985.045 kb on - strand at 985.045 kb on - strand at 985.119 kb on - strand at 985.123 kb on - strand at 985.257 kb on + strand at 985.258 kb on - strand at 985.398 kb on + strand, within SMc00003 at 985.752 kb on - strand, within SMc00003 at 985.939 kb on - strand, within SMc00003
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 983,727 + -2.5 983,727 + -1.9 983,728 - -0.1 983,728 - +0.3 984,431 - +0.0 984,501 + -1.8 984,502 - -1.0 984,502 - +1.4 984,505 - +0.6 984,505 - +2.2 984,505 - -0.2 984,505 - +0.6 984,582 + -0.0 984,582 + -0.7 984,583 - +0.2 984,583 - +0.3 984,583 - +0.8 984,583 - -0.8 984,999 - +0.1 984,999 - +0.4 984,999 - +0.3 985,038 + +1.1 985,045 - -0.5 985,045 - -1.7 985,045 - +0.4 985,119 - -0.3 985,123 - +4.3 985,257 + -0.1 985,258 - +0.5 985,398 + SMc00003 0.16 +0.6 985,752 - SMc00003 0.49 +0.5 985,939 - SMc00003 0.67 +0.4
Or see this region's nucleotide sequence