Strain Fitness in Sinorhizobium meliloti 1021 around SMa1759

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1757 and SMa1759 are separated by 45 nucleotidesSMa1759 and SMa1760 overlap by 27 nucleotides SMa1757: SMa1757 - Short chain, at 999,071 to 999,841 SMa1757 SMa1759: SMa1759 - GntR family transcriptional regulator, at 999,887 to 1,000,567 SMa1759 SMa1760: SMa1760 - phosphotransferase, at 1,000,541 to 1,001,788 SMa1760 Position (kb) 999 1000 1001Strain fitness (log2 ratio) -3 -2 -1 0 1at 999.117 kb on + strandat 999.117 kb on + strandat 999.118 kb on - strandat 999.118 kb on - strandat 999.232 kb on + strand, within SMa1757at 999.388 kb on + strand, within SMa1757at 999.389 kb on - strand, within SMa1757at 999.489 kb on - strand, within SMa1757at 999.489 kb on - strand, within SMa1757at 999.653 kb on - strand, within SMa1757at 999.746 kb on + strand, within SMa1757at 999.792 kb on + strandat 999.792 kb on + strandat 999.792 kb on + strandat 999.793 kb on - strandat 999.926 kb on - strandat 999.958 kb on + strand, within SMa1759at 999.959 kb on - strand, within SMa1759at 999.959 kb on - strand, within SMa1759at 1000.059 kb on + strand, within SMa1759at 1000.060 kb on - strand, within SMa1759at 1000.060 kb on - strand, within SMa1759at 1000.221 kb on - strand, within SMa1759at 1000.243 kb on + strand, within SMa1759at 1000.249 kb on + strand, within SMa1759at 1000.260 kb on - strand, within SMa1759at 1000.631 kb on + strandat 1000.632 kb on - strandat 1000.632 kb on - strandat 1000.691 kb on + strand, within SMa1760at 1000.838 kb on + strand, within SMa1760at 1000.838 kb on + strand, within SMa1760at 1000.838 kb on + strand, within SMa1760at 1000.838 kb on + strand, within SMa1760at 1001.031 kb on + strand, within SMa1760at 1001.032 kb on - strand, within SMa1760at 1001.101 kb on + strand, within SMa1760at 1001.101 kb on + strand, within SMa1760at 1001.101 kb on + strand, within SMa1760at 1001.102 kb on - strand, within SMa1760at 1001.102 kb on - strand, within SMa1760

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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999,117 + -0.5
999,117 + +0.2
999,118 - -1.4
999,118 - -3.4
999,232 + SMa1757 0.21 -0.7
999,388 + SMa1757 0.41 +1.3
999,389 - SMa1757 0.41 +0.3
999,489 - SMa1757 0.54 -0.2
999,489 - SMa1757 0.54 +1.1
999,653 - SMa1757 0.75 -2.7
999,746 + SMa1757 0.88 -2.2
999,792 + +0.1
999,792 + +0.3
999,792 + -1.5
999,793 - -0.2
999,926 - +1.1
999,958 + SMa1759 0.10 +0.8
999,959 - SMa1759 0.11 +1.6
999,959 - SMa1759 0.11 -2.6
1,000,059 + SMa1759 0.25 +0.1
1,000,060 - SMa1759 0.25 +1.2
1,000,060 - SMa1759 0.25 -0.1
1,000,221 - SMa1759 0.49 +1.1
1,000,243 + SMa1759 0.52 -0.2
1,000,249 + SMa1759 0.53 +0.2
1,000,260 - SMa1759 0.55 +0.3
1,000,631 + -0.4
1,000,632 - +0.2
1,000,632 - -1.8
1,000,691 + SMa1760 0.12 -0.7
1,000,838 + SMa1760 0.24 +0.7
1,000,838 + SMa1760 0.24 +0.4
1,000,838 + SMa1760 0.24 +0.2
1,000,838 + SMa1760 0.24 -1.0
1,001,031 + SMa1760 0.39 +0.1
1,001,032 - SMa1760 0.39 +1.1
1,001,101 + SMa1760 0.45 -0.0
1,001,101 + SMa1760 0.45 +0.7
1,001,101 + SMa1760 0.45 -0.9
1,001,102 - SMa1760 0.45 +0.2
1,001,102 - SMa1760 0.45 +0.2

Or see this region's nucleotide sequence