Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1718 and SMa1720 are separated by 116 nucleotides SMa1720 and SMa1724 are separated by 568 nucleotides
SMa1718: SMa1718 - AdeC4 adenine deaminase, at 968,713 to 970,515
SMa1718
SMa1720: SMa1720 - LysR family transcriptional regulator, at 970,632 to 971,576
SMa1720
SMa1724: SMa1724 - Isochorismatase, at 972,145 to 972,690
SMa1724
Position (kb) 970
971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 969.676 kb on + strand, within SMa1718 at 969.833 kb on + strand, within SMa1718 at 969.943 kb on + strand, within SMa1718 at 970.029 kb on + strand, within SMa1718 at 970.029 kb on + strand, within SMa1718 at 970.064 kb on - strand, within SMa1718 at 970.085 kb on + strand, within SMa1718 at 970.085 kb on + strand, within SMa1718 at 970.086 kb on - strand, within SMa1718 at 970.308 kb on - strand, within SMa1718 at 970.308 kb on - strand, within SMa1718 at 970.308 kb on - strand, within SMa1718 at 970.326 kb on + strand, within SMa1718 at 970.349 kb on + strand at 970.349 kb on + strand at 970.350 kb on - strand at 970.350 kb on - strand at 970.359 kb on + strand at 970.409 kb on + strand at 970.410 kb on - strand at 970.541 kb on + strand at 970.666 kb on + strand at 970.728 kb on - strand, within SMa1720 at 970.778 kb on - strand, within SMa1720 at 970.890 kb on - strand, within SMa1720 at 970.963 kb on - strand, within SMa1720 at 970.963 kb on - strand, within SMa1720 at 970.980 kb on + strand, within SMa1720 at 970.981 kb on - strand, within SMa1720 at 971.061 kb on - strand, within SMa1720 at 971.095 kb on - strand, within SMa1720 at 971.134 kb on - strand, within SMa1720 at 971.148 kb on + strand, within SMa1720 at 971.448 kb on - strand, within SMa1720 at 971.448 kb on - strand, within SMa1720 at 971.448 kb on - strand, within SMa1720 at 971.451 kb on + strand, within SMa1720 at 971.451 kb on + strand, within SMa1720 at 971.515 kb on - strand at 971.574 kb on + strand at 971.580 kb on + strand at 971.580 kb on + strand at 971.580 kb on + strand at 971.817 kb on + strand at 971.896 kb on - strand at 972.158 kb on + strand at 972.159 kb on - strand at 972.159 kb on - strand at 972.159 kb on - strand at 972.207 kb on + strand, within SMa1724 at 972.207 kb on + strand, within SMa1724 at 972.207 kb on + strand, within SMa1724 at 972.207 kb on + strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.209 kb on + strand, within SMa1724 at 972.209 kb on + strand, within SMa1724 at 972.209 kb on + strand, within SMa1724 at 972.209 kb on + strand, within SMa1724 at 972.210 kb on - strand, within SMa1724 at 972.210 kb on - strand, within SMa1724 at 972.210 kb on - strand, within SMa1724 at 972.210 kb on - strand, within SMa1724 at 972.432 kb on - strand, within SMa1724 at 972.543 kb on + strand, within SMa1724
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 969,676 + SMa1718 0.53 +2.8 969,833 + SMa1718 0.62 -1.5 969,943 + SMa1718 0.68 -0.6 970,029 + SMa1718 0.73 +0.4 970,029 + SMa1718 0.73 +0.2 970,064 - SMa1718 0.75 +0.1 970,085 + SMa1718 0.76 +2.6 970,085 + SMa1718 0.76 +0.4 970,086 - SMa1718 0.76 -0.2 970,308 - SMa1718 0.88 +1.3 970,308 - SMa1718 0.88 +0.1 970,308 - SMa1718 0.88 +1.3 970,326 + SMa1718 0.89 +0.2 970,349 + -0.6 970,349 + -0.4 970,350 - -2.1 970,350 - +0.7 970,359 + -1.5 970,409 + -0.1 970,410 - -1.4 970,541 + -0.8 970,666 + -0.5 970,728 - SMa1720 0.10 -1.0 970,778 - SMa1720 0.15 +0.4 970,890 - SMa1720 0.27 -0.8 970,963 - SMa1720 0.35 -1.4 970,963 - SMa1720 0.35 -2.7 970,980 + SMa1720 0.37 +0.3 970,981 - SMa1720 0.37 +2.9 971,061 - SMa1720 0.45 -2.0 971,095 - SMa1720 0.49 -0.0 971,134 - SMa1720 0.53 +0.2 971,148 + SMa1720 0.55 -0.0 971,448 - SMa1720 0.86 +0.0 971,448 - SMa1720 0.86 +0.3 971,448 - SMa1720 0.86 -1.4 971,451 + SMa1720 0.87 +0.1 971,451 + SMa1720 0.87 +0.1 971,515 - +0.6 971,574 + +0.3 971,580 + -1.0 971,580 + +1.6 971,580 + +0.3 971,817 + +0.1 971,896 - -0.4 972,158 + -3.3 972,159 - -2.0 972,159 - -1.1 972,159 - -0.8 972,207 + SMa1724 0.11 +1.9 972,207 + SMa1724 0.11 +0.1 972,207 + SMa1724 0.11 +1.2 972,207 + SMa1724 0.11 -0.3 972,208 - SMa1724 0.12 +0.9 972,208 - SMa1724 0.12 +2.7 972,208 - SMa1724 0.12 -1.5 972,208 - SMa1724 0.12 -1.1 972,208 - SMa1724 0.12 -0.1 972,208 - SMa1724 0.12 -2.1 972,208 - SMa1724 0.12 -3.2 972,209 + SMa1724 0.12 +0.4 972,209 + SMa1724 0.12 +0.9 972,209 + SMa1724 0.12 -1.1 972,209 + SMa1724 0.12 +0.5 972,210 - SMa1724 0.12 -1.3 972,210 - SMa1724 0.12 -1.4 972,210 - SMa1724 0.12 +1.0 972,210 - SMa1724 0.12 -0.3 972,432 - SMa1724 0.53 +1.0 972,543 + SMa1724 0.73 -1.1
Or see this region's nucleotide sequence