Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1556 and SMa1558 overlap by 14 nucleotides SMa1558 and SMa1561 are separated by 9 nucleotides
SMa1556: SMa1556 - Methyl-accepting chemotaxis protein, at 860,424 to 862,109
SMa1556
SMa1558: SMa1558 - Sensor histidine kinase, at 862,096 to 864,222
SMa1558
SMa1561: SMa1561 - chemotaxis protein CheB, at 864,232 to 865,296
SMa1561
Position (kb) 862
863
864
865 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 861.444 kb on + strand, within SMa1556 at 861.975 kb on + strand at 861.975 kb on + strand at 861.976 kb on - strand at 861.976 kb on - strand at 861.976 kb on - strand at 862.100 kb on + strand at 862.100 kb on + strand at 862.100 kb on + strand at 862.100 kb on + strand at 862.101 kb on - strand at 862.101 kb on - strand at 862.127 kb on + strand at 862.127 kb on + strand at 862.128 kb on - strand at 862.245 kb on - strand at 862.245 kb on - strand at 862.245 kb on - strand at 862.245 kb on - strand at 862.258 kb on - strand at 862.258 kb on - strand at 862.350 kb on - strand, within SMa1558 at 862.350 kb on - strand, within SMa1558 at 862.385 kb on + strand, within SMa1558 at 862.962 kb on - strand, within SMa1558 at 863.289 kb on + strand, within SMa1558 at 863.289 kb on + strand, within SMa1558 at 863.289 kb on + strand, within SMa1558 at 863.290 kb on - strand, within SMa1558 at 863.291 kb on + strand, within SMa1558 at 863.291 kb on + strand, within SMa1558 at 863.291 kb on + strand, within SMa1558 at 863.291 kb on + strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.345 kb on + strand, within SMa1558 at 863.346 kb on - strand, within SMa1558 at 863.354 kb on + strand, within SMa1558 at 863.355 kb on - strand, within SMa1558 at 863.507 kb on + strand, within SMa1558 at 863.507 kb on + strand, within SMa1558 at 863.508 kb on - strand, within SMa1558 at 863.530 kb on - strand, within SMa1558 at 863.731 kb on + strand, within SMa1558 at 863.893 kb on + strand, within SMa1558 at 863.894 kb on - strand, within SMa1558 at 863.894 kb on - strand, within SMa1558 at 863.917 kb on - strand, within SMa1558 at 863.919 kb on - strand, within SMa1558 at 864.095 kb on + strand at 864.096 kb on - strand at 864.160 kb on + strand at 864.236 kb on + strand at 864.237 kb on - strand at 864.281 kb on + strand at 864.291 kb on + strand at 864.320 kb on + strand at 864.320 kb on + strand at 864.321 kb on - strand at 864.437 kb on + strand, within SMa1561 at 864.438 kb on - strand, within SMa1561 at 864.464 kb on + strand, within SMa1561 at 864.465 kb on - strand, within SMa1561 at 864.626 kb on + strand, within SMa1561 at 864.920 kb on - strand, within SMa1561 at 864.920 kb on - strand, within SMa1561 at 864.920 kb on - strand, within SMa1561 at 864.969 kb on - strand, within SMa1561 at 865.019 kb on - strand, within SMa1561
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 861,444 + SMa1556 0.60 +0.1 861,975 + +0.4 861,975 + +0.1 861,976 - +0.3 861,976 - -1.6 861,976 - +1.0 862,100 + -1.3 862,100 + -3.2 862,100 + -0.5 862,100 + +0.3 862,101 - -2.5 862,101 - -0.5 862,127 + -0.9 862,127 + -2.3 862,128 - +0.0 862,245 - +0.7 862,245 - +1.1 862,245 - +0.1 862,245 - -0.5 862,258 - +1.1 862,258 - -0.2 862,350 - SMa1558 0.12 +0.7 862,350 - SMa1558 0.12 +1.3 862,385 + SMa1558 0.14 +0.3 862,962 - SMa1558 0.41 +1.2 863,289 + SMa1558 0.56 +2.3 863,289 + SMa1558 0.56 -0.1 863,289 + SMa1558 0.56 -0.7 863,290 - SMa1558 0.56 +0.2 863,291 + SMa1558 0.56 +0.6 863,291 + SMa1558 0.56 +0.1 863,291 + SMa1558 0.56 +0.1 863,291 + SMa1558 0.56 -0.6 863,292 - SMa1558 0.56 +0.4 863,292 - SMa1558 0.56 -0.1 863,292 - SMa1558 0.56 -2.7 863,292 - SMa1558 0.56 +0.7 863,292 - SMa1558 0.56 +0.5 863,292 - SMa1558 0.56 +1.8 863,292 - SMa1558 0.56 -0.5 863,345 + SMa1558 0.59 +1.3 863,346 - SMa1558 0.59 +0.0 863,354 + SMa1558 0.59 +1.2 863,355 - SMa1558 0.59 -0.5 863,507 + SMa1558 0.66 +1.7 863,507 + SMa1558 0.66 -1.9 863,508 - SMa1558 0.66 +2.2 863,530 - SMa1558 0.67 -1.0 863,731 + SMa1558 0.77 -0.3 863,893 + SMa1558 0.84 +1.4 863,894 - SMa1558 0.85 -0.0 863,894 - SMa1558 0.85 -1.5 863,917 - SMa1558 0.86 +1.3 863,919 - SMa1558 0.86 -0.3 864,095 + -1.0 864,096 - +0.6 864,160 + -0.6 864,236 + -1.0 864,237 - +0.6 864,281 + -0.1 864,291 + +0.1 864,320 + +0.7 864,320 + +0.4 864,321 - -0.6 864,437 + SMa1561 0.19 -1.9 864,438 - SMa1561 0.19 +0.4 864,464 + SMa1561 0.22 -0.7 864,465 - SMa1561 0.22 -0.9 864,626 + SMa1561 0.37 -0.3 864,920 - SMa1561 0.65 +0.2 864,920 - SMa1561 0.65 +1.9 864,920 - SMa1561 0.65 +0.1 864,969 - SMa1561 0.69 -0.8 865,019 - SMa1561 0.74 -1.4
Or see this region's nucleotide sequence