Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1100 and SMa1101 overlap by 11 nucleotides SMa1101 and SMa1103 overlap by 23 nucleotides SMa1103 and SMa1104 are separated by 678 nucleotides
SMa1100: SMa1100 - hypothetical protein, at 600,897 to 601,418
SMa1100
SMa1101: SMa1101 - hypothetical protein, at 601,408 to 601,827
SMa1101
SMa1103: SMa1103 - adenylate cyclase, at 601,805 to 603,559
SMa1103
SMa1104: SMa1104 - hypothetical protein, at 604,238 to 604,468
SMa1104
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 600.936 kb on - strand at 601.062 kb on + strand, within SMa1100 at 601.063 kb on - strand, within SMa1100 at 601.079 kb on - strand, within SMa1100 at 601.263 kb on + strand, within SMa1100 at 601.352 kb on - strand, within SMa1100 at 601.556 kb on - strand, within SMa1101 at 601.695 kb on + strand, within SMa1101 at 601.900 kb on - strand at 601.903 kb on + strand at 601.904 kb on - strand at 601.904 kb on - strand at 601.947 kb on - strand at 602.066 kb on + strand, within SMa1103 at 602.066 kb on + strand, within SMa1103 at 602.067 kb on - strand, within SMa1103 at 602.116 kb on + strand, within SMa1103 at 602.118 kb on + strand, within SMa1103 at 602.119 kb on - strand, within SMa1103 at 602.199 kb on + strand, within SMa1103 at 602.204 kb on - strand, within SMa1103 at 602.483 kb on - strand, within SMa1103 at 602.576 kb on - strand, within SMa1103 at 602.610 kb on + strand, within SMa1103 at 602.661 kb on + strand, within SMa1103 at 602.661 kb on + strand, within SMa1103 at 602.661 kb on + strand, within SMa1103 at 602.662 kb on - strand, within SMa1103 at 602.691 kb on + strand, within SMa1103 at 602.810 kb on - strand, within SMa1103 at 602.882 kb on - strand, within SMa1103 at 603.055 kb on - strand, within SMa1103 at 603.055 kb on - strand, within SMa1103 at 603.211 kb on + strand, within SMa1103 at 603.243 kb on + strand, within SMa1103 at 603.244 kb on - strand, within SMa1103 at 603.318 kb on - strand, within SMa1103 at 603.320 kb on + strand, within SMa1103 at 603.403 kb on + strand at 603.429 kb on + strand at 603.429 kb on + strand at 603.530 kb on - strand at 603.530 kb on - strand at 603.530 kb on - strand at 603.533 kb on + strand at 603.533 kb on + strand at 603.650 kb on - strand at 603.766 kb on - strand at 603.820 kb on - strand at 603.967 kb on + strand at 604.036 kb on + strand at 604.146 kb on - strand at 604.173 kb on + strand at 604.223 kb on + strand at 604.549 kb on + strand at 604.549 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 600,936 - -0.1 601,062 + SMa1100 0.32 +0.1 601,063 - SMa1100 0.32 +3.2 601,079 - SMa1100 0.35 -0.9 601,263 + SMa1100 0.70 +0.4 601,352 - SMa1100 0.87 -0.2 601,556 - SMa1101 0.35 +0.5 601,695 + SMa1101 0.68 -0.3 601,900 - +1.2 601,903 + -0.7 601,904 - -1.0 601,904 - -1.2 601,947 - +1.1 602,066 + SMa1103 0.15 +1.7 602,066 + SMa1103 0.15 -1.5 602,067 - SMa1103 0.15 -0.4 602,116 + SMa1103 0.18 +1.2 602,118 + SMa1103 0.18 +1.1 602,119 - SMa1103 0.18 +0.3 602,199 + SMa1103 0.22 +0.3 602,204 - SMa1103 0.23 -0.7 602,483 - SMa1103 0.39 -2.3 602,576 - SMa1103 0.44 +0.5 602,610 + SMa1103 0.46 -0.7 602,661 + SMa1103 0.49 +0.7 602,661 + SMa1103 0.49 +1.4 602,661 + SMa1103 0.49 +0.7 602,662 - SMa1103 0.49 -0.8 602,691 + SMa1103 0.50 +0.3 602,810 - SMa1103 0.57 -0.3 602,882 - SMa1103 0.61 +0.5 603,055 - SMa1103 0.71 +1.5 603,055 - SMa1103 0.71 +0.1 603,211 + SMa1103 0.80 +0.1 603,243 + SMa1103 0.82 -0.6 603,244 - SMa1103 0.82 -3.8 603,318 - SMa1103 0.86 +1.2 603,320 + SMa1103 0.86 +0.0 603,403 + +1.6 603,429 + -0.4 603,429 + -0.4 603,530 - -1.3 603,530 - -3.6 603,530 - +0.3 603,533 + -0.3 603,533 + -0.8 603,650 - +1.2 603,766 - -0.7 603,820 - -0.2 603,967 + +0.2 604,036 + +0.3 604,146 - +0.1 604,173 + -0.4 604,223 + -1.3 604,549 + -0.6 604,549 + +0.2
Or see this region's nucleotide sequence