Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1079 and SMa1081 are separated by 21 nucleotides SMa1081 and SMa1082 are separated by 281 nucleotides SMa1082 and SMa1084 are separated by 94 nucleotides
SMa1079: SMa1079 - TspO/MBR family protein, at 589,343 to 589,885
SMa1079
SMa1081: SMa1081 - hypothetical protein, at 589,907 to 590,068
SMa1081
SMa1082: SMa1082 - hypothetical protein, at 590,350 to 590,970
SMa1082
SMa1084: SMa1084 - phosphoketolase, at 591,065 to 593,440
SMa1084
Position (kb) 590
591 Strain fitness (log2 ratio) -2
-1
0
1
2 at 589.468 kb on + strand, within SMa1079 at 589.527 kb on + strand, within SMa1079 at 589.528 kb on - strand, within SMa1079 at 589.553 kb on + strand, within SMa1079 at 589.553 kb on + strand, within SMa1079 at 589.554 kb on - strand, within SMa1079 at 589.631 kb on + strand, within SMa1079 at 589.631 kb on + strand, within SMa1079 at 589.632 kb on - strand, within SMa1079 at 589.714 kb on + strand, within SMa1079 at 589.715 kb on - strand, within SMa1079 at 589.797 kb on - strand, within SMa1079 at 589.986 kb on + strand, within SMa1081 at 590.031 kb on - strand, within SMa1081 at 590.031 kb on - strand, within SMa1081 at 590.113 kb on + strand at 590.114 kb on - strand at 590.114 kb on - strand at 590.172 kb on + strand at 590.172 kb on + strand at 590.173 kb on - strand at 590.173 kb on - strand at 590.352 kb on - strand at 590.352 kb on - strand at 590.352 kb on - strand at 590.377 kb on + strand at 590.377 kb on + strand at 590.378 kb on - strand at 590.423 kb on + strand, within SMa1082 at 590.424 kb on - strand, within SMa1082 at 590.456 kb on - strand, within SMa1082 at 590.571 kb on + strand, within SMa1082 at 590.583 kb on + strand, within SMa1082 at 590.583 kb on + strand, within SMa1082 at 590.584 kb on - strand, within SMa1082 at 590.584 kb on - strand, within SMa1082 at 590.584 kb on - strand, within SMa1082 at 590.802 kb on + strand, within SMa1082 at 590.802 kb on + strand, within SMa1082 at 590.928 kb on + strand at 591.012 kb on + strand at 591.012 kb on + strand at 591.032 kb on - strand at 591.142 kb on - strand at 591.142 kb on - strand at 591.142 kb on - strand at 591.306 kb on + strand, within SMa1084 at 591.307 kb on - strand, within SMa1084 at 591.345 kb on + strand, within SMa1084 at 591.346 kb on - strand, within SMa1084 at 591.718 kb on - strand, within SMa1084 at 591.760 kb on + strand, within SMa1084 at 591.760 kb on + strand, within SMa1084 at 591.884 kb on + strand, within SMa1084 at 591.884 kb on + strand, within SMa1084 at 591.884 kb on + strand, within SMa1084 at 591.885 kb on - strand, within SMa1084 at 591.889 kb on - strand, within SMa1084 at 591.889 kb on - strand at 591.889 kb on - strand, within SMa1084 at 591.964 kb on + strand, within SMa1084 at 591.965 kb on - strand, within SMa1084
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 589,468 + SMa1079 0.23 +0.5 589,527 + SMa1079 0.34 +0.1 589,528 - SMa1079 0.34 +1.0 589,553 + SMa1079 0.39 -0.5 589,553 + SMa1079 0.39 -1.2 589,554 - SMa1079 0.39 -1.6 589,631 + SMa1079 0.53 -1.4 589,631 + SMa1079 0.53 +2.0 589,632 - SMa1079 0.53 -0.4 589,714 + SMa1079 0.68 -1.5 589,715 - SMa1079 0.69 -0.8 589,797 - SMa1079 0.84 +1.2 589,986 + SMa1081 0.49 +0.1 590,031 - SMa1081 0.77 +0.0 590,031 - SMa1081 0.77 +0.5 590,113 + -0.0 590,114 - -0.0 590,114 - +0.1 590,172 + -1.2 590,172 + +0.8 590,173 - -0.0 590,173 - +1.1 590,352 - -0.9 590,352 - +0.1 590,352 - +0.5 590,377 + -1.4 590,377 + -0.6 590,378 - +0.1 590,423 + SMa1082 0.12 +1.1 590,424 - SMa1082 0.12 +0.0 590,456 - SMa1082 0.17 +2.0 590,571 + SMa1082 0.36 -0.3 590,583 + SMa1082 0.38 -0.1 590,583 + SMa1082 0.38 +0.7 590,584 - SMa1082 0.38 -2.1 590,584 - SMa1082 0.38 +1.2 590,584 - SMa1082 0.38 +0.7 590,802 + SMa1082 0.73 -0.1 590,802 + SMa1082 0.73 +2.0 590,928 + -0.3 591,012 + -0.5 591,012 + -1.8 591,032 - +0.2 591,142 - -0.5 591,142 - +0.8 591,142 - -0.3 591,306 + SMa1084 0.10 +1.9 591,307 - SMa1084 0.10 +0.1 591,345 + SMa1084 0.12 -0.7 591,346 - SMa1084 0.12 +1.3 591,718 - SMa1084 0.27 -1.4 591,760 + SMa1084 0.29 -1.2 591,760 + SMa1084 0.29 +0.6 591,884 + SMa1084 0.34 -1.0 591,884 + SMa1084 0.34 +0.3 591,884 + SMa1084 0.34 +2.4 591,885 - SMa1084 0.35 -1.3 591,889 - SMa1084 0.35 +0.1 591,889 - +0.2 591,889 - SMa1084 0.35 -2.3 591,964 + SMa1084 0.38 -0.5 591,965 - SMa1084 0.38 -0.4
Or see this region's nucleotide sequence