Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0939 and SMa0940 are separated by 4 nucleotides SMa0940 and SMa0941 are separated by 120 nucleotides SMa0941 and SMa0943 are separated by 231 nucleotides
SMa0939: SMa0939 - sensor histidine kinase of two-component system, at 523,213 to 525,114
SMa0939
SMa0940: SMa0940 - Response regulator, at 525,119 to 525,733
SMa0940
SMa0941: SMa0941 - hypothetical protein, at 525,854 to 526,237
SMa0941
SMa0943: SMa0943 - arylsulfatase, at 526,469 to 528,106
SMa0943
Position (kb) 525
526
527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 525.213 kb on - strand, within SMa0940 at 525.213 kb on - strand, within SMa0940 at 525.380 kb on - strand, within SMa0940 at 525.521 kb on - strand, within SMa0940 at 525.521 kb on - strand, within SMa0940 at 525.521 kb on - strand, within SMa0940 at 525.613 kb on + strand, within SMa0940 at 525.614 kb on - strand, within SMa0940 at 525.776 kb on - strand at 525.850 kb on + strand at 525.850 kb on + strand at 525.916 kb on - strand, within SMa0941 at 525.916 kb on - strand, within SMa0941 at 525.956 kb on + strand, within SMa0941 at 525.957 kb on - strand, within SMa0941 at 525.989 kb on - strand, within SMa0941 at 526.109 kb on - strand, within SMa0941 at 526.285 kb on + strand at 526.286 kb on - strand at 526.286 kb on - strand at 526.303 kb on + strand at 526.477 kb on + strand at 526.477 kb on + strand at 526.477 kb on + strand at 526.612 kb on + strand at 526.614 kb on + strand at 526.614 kb on + strand at 526.614 kb on + strand at 526.615 kb on - strand at 526.661 kb on + strand, within SMa0943 at 526.737 kb on + strand, within SMa0943 at 526.738 kb on - strand, within SMa0943 at 526.739 kb on + strand, within SMa0943 at 526.739 kb on + strand, within SMa0943 at 526.740 kb on - strand, within SMa0943 at 526.867 kb on - strand, within SMa0943 at 526.937 kb on + strand, within SMa0943 at 526.987 kb on - strand, within SMa0943 at 527.074 kb on + strand at 527.074 kb on + strand, within SMa0943 at 527.075 kb on - strand, within SMa0943 at 527.130 kb on + strand, within SMa0943 at 527.131 kb on - strand, within SMa0943 at 527.131 kb on - strand, within SMa0943
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 525,213 - SMa0940 0.15 +1.9 525,213 - SMa0940 0.15 -1.2 525,380 - SMa0940 0.42 -0.2 525,521 - SMa0940 0.65 +0.9 525,521 - SMa0940 0.65 +1.5 525,521 - SMa0940 0.65 +1.2 525,613 + SMa0940 0.80 -0.4 525,614 - SMa0940 0.80 +0.3 525,776 - +0.2 525,850 + -2.1 525,850 + +0.4 525,916 - SMa0941 0.16 -1.2 525,916 - SMa0941 0.16 -0.3 525,956 + SMa0941 0.27 -1.4 525,957 - SMa0941 0.27 -2.3 525,989 - SMa0941 0.35 -2.9 526,109 - SMa0941 0.66 -0.0 526,285 + -1.5 526,286 - -1.8 526,286 - +0.2 526,303 + +0.2 526,477 + +0.5 526,477 + -1.1 526,477 + +0.4 526,612 + -2.0 526,614 + +1.2 526,614 + +0.1 526,614 + -0.8 526,615 - -1.0 526,661 + SMa0943 0.12 -2.0 526,737 + SMa0943 0.16 +0.3 526,738 - SMa0943 0.16 +1.0 526,739 + SMa0943 0.16 +0.1 526,739 + SMa0943 0.16 +0.3 526,740 - SMa0943 0.17 -0.1 526,867 - SMa0943 0.24 -1.4 526,937 + SMa0943 0.29 +0.9 526,987 - SMa0943 0.32 -0.2 527,074 + +3.5 527,074 + SMa0943 0.37 -0.7 527,075 - SMa0943 0.37 +0.6 527,130 + SMa0943 0.40 +0.2 527,131 - SMa0943 0.40 +2.1 527,131 - SMa0943 0.40 -0.5
Or see this region's nucleotide sequence