Strain Fitness in Sinorhizobium meliloti 1021 around SMa0939

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0937 and SMa0939 are separated by 292 nucleotidesSMa0939 and SMa0940 are separated by 4 nucleotidesSMa0940 and SMa0941 are separated by 120 nucleotides SMa0937: SMa0937 - hypothetical protein, at 520,761 to 522,920 SMa0937 SMa0939: SMa0939 - sensor histidine kinase of two-component system, at 523,213 to 525,114 SMa0939 SMa0940: SMa0940 - Response regulator, at 525,119 to 525,733 SMa0940 SMa0941: SMa0941 - hypothetical protein, at 525,854 to 526,237 SMa0941 Position (kb) 523 524 525 526Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 522.834 kb on - strandat 522.951 kb on + strandat 522.952 kb on - strandat 522.952 kb on - strandat 523.093 kb on + strandat 523.093 kb on + strandat 523.094 kb on - strandat 523.094 kb on - strandat 523.094 kb on - strandat 523.111 kb on - strandat 523.116 kb on - strandat 523.127 kb on + strandat 523.155 kb on - strandat 523.373 kb on - strandat 523.373 kb on - strandat 523.405 kb on - strand, within SMa0939at 523.520 kb on + strand, within SMa0939at 523.544 kb on - strand, within SMa0939at 523.724 kb on + strand, within SMa0939at 523.857 kb on + strand, within SMa0939at 523.870 kb on + strand, within SMa0939at 523.955 kb on + strand, within SMa0939at 523.956 kb on - strand, within SMa0939at 523.956 kb on - strand, within SMa0939at 524.032 kb on + strand, within SMa0939at 524.032 kb on + strand, within SMa0939at 524.032 kb on + strand, within SMa0939at 524.032 kb on + strand, within SMa0939at 524.033 kb on - strand, within SMa0939at 524.042 kb on - strand, within SMa0939at 524.176 kb on + strand, within SMa0939at 524.177 kb on - strand, within SMa0939at 524.177 kb on - strand, within SMa0939at 524.246 kb on + strand, within SMa0939at 524.279 kb on - strand, within SMa0939at 524.294 kb on + strand, within SMa0939at 525.213 kb on - strand, within SMa0940at 525.213 kb on - strand, within SMa0940at 525.380 kb on - strand, within SMa0940at 525.521 kb on - strand, within SMa0940at 525.521 kb on - strand, within SMa0940at 525.521 kb on - strand, within SMa0940at 525.613 kb on + strand, within SMa0940at 525.614 kb on - strand, within SMa0940at 525.776 kb on - strandat 525.850 kb on + strandat 525.850 kb on + strandat 525.916 kb on - strand, within SMa0941at 525.916 kb on - strand, within SMa0941at 525.956 kb on + strand, within SMa0941at 525.957 kb on - strand, within SMa0941at 525.989 kb on - strand, within SMa0941at 526.109 kb on - strand, within SMa0941

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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522,834 - +0.5
522,951 + -0.0
522,952 - -0.4
522,952 - -0.3
523,093 + +0.2
523,093 + +0.9
523,094 - -0.9
523,094 - -1.0
523,094 - -0.2
523,111 - +2.2
523,116 - +0.0
523,127 + -0.2
523,155 - -0.2
523,373 - +1.2
523,373 - +0.7
523,405 - SMa0939 0.10 -1.1
523,520 + SMa0939 0.16 -0.9
523,544 - SMa0939 0.17 +0.1
523,724 + SMa0939 0.27 +0.5
523,857 + SMa0939 0.34 +0.2
523,870 + SMa0939 0.35 +0.6
523,955 + SMa0939 0.39 +0.6
523,956 - SMa0939 0.39 -0.8
523,956 - SMa0939 0.39 -2.0
524,032 + SMa0939 0.43 -2.7
524,032 + SMa0939 0.43 -3.3
524,032 + SMa0939 0.43 -1.0
524,032 + SMa0939 0.43 -0.8
524,033 - SMa0939 0.43 -0.8
524,042 - SMa0939 0.44 +0.2
524,176 + SMa0939 0.51 -0.5
524,177 - SMa0939 0.51 -0.4
524,177 - SMa0939 0.51 +1.1
524,246 + SMa0939 0.54 -2.9
524,279 - SMa0939 0.56 -1.9
524,294 + SMa0939 0.57 +0.5
525,213 - SMa0940 0.15 +1.9
525,213 - SMa0940 0.15 -1.2
525,380 - SMa0940 0.42 -0.2
525,521 - SMa0940 0.65 +0.9
525,521 - SMa0940 0.65 +1.5
525,521 - SMa0940 0.65 +1.2
525,613 + SMa0940 0.80 -0.4
525,614 - SMa0940 0.80 +0.3
525,776 - +0.2
525,850 + -2.1
525,850 + +0.4
525,916 - SMa0941 0.16 -1.2
525,916 - SMa0941 0.16 -0.3
525,956 + SMa0941 0.27 -1.4
525,957 - SMa0941 0.27 -2.3
525,989 - SMa0941 0.35 -2.9
526,109 - SMa0941 0.66 -0.0

Or see this region's nucleotide sequence