Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0394 and SMa0396 overlap by 4 nucleotides SMa0396 and SMa0398 overlap by 4 nucleotides
SMa0394: SMa0394 - ABC transporter permease, at 213,683 to 214,627
SMa0394
SMa0396: SMa0396 - ABC transporter permease, at 214,624 to 215,424
SMa0396
SMa0398: SMa0398 - histidinol dehydrogenase, at 215,421 to 216,791
SMa0398
Position (kb) 214
215
216 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 213.624 kb on + strand at 213.704 kb on + strand at 213.705 kb on - strand at 213.884 kb on - strand, within SMa0394 at 213.884 kb on - strand, within SMa0394 at 213.884 kb on - strand, within SMa0394 at 213.905 kb on + strand, within SMa0394 at 213.905 kb on + strand, within SMa0394 at 213.905 kb on + strand, within SMa0394 at 213.920 kb on + strand, within SMa0394 at 214.022 kb on + strand, within SMa0394 at 214.022 kb on + strand, within SMa0394 at 214.023 kb on - strand, within SMa0394 at 214.029 kb on - strand, within SMa0394 at 214.029 kb on - strand, within SMa0394 at 214.042 kb on + strand, within SMa0394 at 214.205 kb on + strand, within SMa0394 at 214.206 kb on - strand, within SMa0394 at 214.206 kb on - strand, within SMa0394 at 214.206 kb on - strand, within SMa0394 at 214.221 kb on + strand, within SMa0394 at 214.241 kb on + strand, within SMa0394 at 214.242 kb on - strand, within SMa0394 at 214.404 kb on + strand, within SMa0394 at 214.405 kb on - strand, within SMa0394 at 214.485 kb on - strand, within SMa0394 at 214.485 kb on - strand, within SMa0394 at 214.485 kb on - strand, within SMa0394 at 214.598 kb on - strand at 214.900 kb on + strand, within SMa0396 at 214.900 kb on + strand, within SMa0396 at 214.934 kb on - strand, within SMa0396 at 214.992 kb on - strand, within SMa0396 at 215.162 kb on - strand, within SMa0396 at 215.162 kb on - strand, within SMa0396 at 215.162 kb on - strand, within SMa0396 at 215.293 kb on + strand, within SMa0396 at 215.293 kb on + strand, within SMa0396 at 215.346 kb on - strand at 215.346 kb on - strand at 215.405 kb on - strand at 215.448 kb on + strand at 215.449 kb on - strand at 215.481 kb on + strand at 215.545 kb on + strand at 215.546 kb on - strand at 215.648 kb on - strand at 215.895 kb on - strand, within SMa0398 at 216.064 kb on - strand at 216.276 kb on + strand, within SMa0398 at 216.277 kb on - strand, within SMa0398
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 213,624 + -0.4 213,704 + +0.0 213,705 - -0.1 213,884 - SMa0394 0.21 -2.6 213,884 - SMa0394 0.21 +0.1 213,884 - SMa0394 0.21 +0.3 213,905 + SMa0394 0.23 +0.7 213,905 + SMa0394 0.23 -0.9 213,905 + SMa0394 0.23 -2.5 213,920 + SMa0394 0.25 -1.2 214,022 + SMa0394 0.36 -0.4 214,022 + SMa0394 0.36 +0.4 214,023 - SMa0394 0.36 +0.5 214,029 - SMa0394 0.37 +0.0 214,029 - SMa0394 0.37 +0.1 214,042 + SMa0394 0.38 -1.0 214,205 + SMa0394 0.55 +0.0 214,206 - SMa0394 0.55 -0.1 214,206 - SMa0394 0.55 -1.5 214,206 - SMa0394 0.55 +0.9 214,221 + SMa0394 0.57 -0.6 214,241 + SMa0394 0.59 -0.7 214,242 - SMa0394 0.59 -0.2 214,404 + SMa0394 0.76 +0.3 214,405 - SMa0394 0.76 -0.0 214,485 - SMa0394 0.85 -0.3 214,485 - SMa0394 0.85 -0.4 214,485 - SMa0394 0.85 -1.1 214,598 - -1.8 214,900 + SMa0396 0.34 -0.8 214,900 + SMa0396 0.34 -2.2 214,934 - SMa0396 0.39 +1.3 214,992 - SMa0396 0.46 +3.7 215,162 - SMa0396 0.67 -1.5 215,162 - SMa0396 0.67 -0.2 215,162 - SMa0396 0.67 -0.3 215,293 + SMa0396 0.84 +0.3 215,293 + SMa0396 0.84 -0.2 215,346 - +0.3 215,346 - -0.5 215,405 - -0.6 215,448 + -4.7 215,449 - -2.0 215,481 + -2.0 215,545 + +0.3 215,546 - -1.2 215,648 - +1.3 215,895 - SMa0398 0.35 +0.1 216,064 - -0.7 216,276 + SMa0398 0.62 -0.6 216,277 - SMa0398 0.62 +3.1
Or see this region's nucleotide sequence