Strain Fitness in Sinorhizobium meliloti 1021 around SMa0191

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0190 and SMa0191 are separated by 609 nucleotidesSMa0191 and SMa0193 overlap by 4 nucleotidesSMa0193 and SMa0196 are separated by 296 nucleotides SMa0190: SMa0190 - transcriptional regulator, at 104,560 to 105,189 SMa0190 SMa0191: SMa0191 - hypothetical protein, at 105,799 to 106,329 SMa0191 SMa0193: SMa0193 - hypothetical protein, at 106,326 to 106,652 SMa0193 SMa0196: SMa0196 - gluconolactonase, at 106,949 to 107,863 SMa0196 Position (kb) 105 106 107Strain fitness (log2 ratio) -2 -1 0 1 2 3at 105.048 kb on + strand, within SMa0190at 105.061 kb on + strand, within SMa0190at 105.061 kb on + strand, within SMa0190at 105.062 kb on - strand, within SMa0190at 105.092 kb on - strand, within SMa0190at 105.131 kb on + strandat 105.131 kb on + strandat 105.131 kb on + strandat 105.131 kb on + strandat 105.187 kb on + strandat 105.255 kb on - strandat 105.255 kb on - strandat 105.259 kb on + strandat 105.259 kb on + strandat 105.259 kb on + strandat 105.259 kb on + strandat 105.260 kb on - strandat 105.260 kb on - strandat 105.260 kb on - strandat 105.260 kb on - strandat 105.260 kb on - strandat 105.264 kb on - strandat 105.305 kb on + strandat 105.365 kb on - strandat 105.394 kb on + strandat 105.394 kb on + strandat 105.394 kb on + strandat 105.450 kb on + strandat 105.479 kb on + strandat 105.479 kb on + strandat 105.479 kb on + strandat 105.479 kb on + strandat 105.479 kb on + strandat 105.479 kb on + strandat 105.479 kb on + strandat 105.480 kb on - strandat 105.480 kb on - strandat 105.483 kb on + strandat 105.549 kb on + strandat 105.550 kb on - strandat 105.666 kb on - strandat 105.666 kb on - strandat 105.675 kb on + strandat 105.728 kb on + strandat 105.728 kb on + strandat 105.729 kb on - strandat 105.729 kb on - strandat 105.729 kb on - strandat 105.737 kb on + strandat 105.737 kb on + strandat 105.777 kb on - strandat 105.875 kb on - strand, within SMa0191at 105.976 kb on + strand, within SMa0191at 105.977 kb on - strand, within SMa0191at 106.080 kb on + strand, within SMa0191at 106.109 kb on + strand, within SMa0191at 106.110 kb on - strand, within SMa0191at 106.110 kb on - strand, within SMa0191at 106.167 kb on + strand, within SMa0191at 106.167 kb on + strand, within SMa0191at 106.167 kb on + strand, within SMa0191at 106.167 kb on + strand, within SMa0191at 106.250 kb on + strand, within SMa0191at 106.347 kb on + strandat 106.449 kb on - strand, within SMa0193at 106.735 kb on + strandat 106.841 kb on + strandat 106.950 kb on + strandat 106.981 kb on - strandat 106.989 kb on + strandat 107.243 kb on + strand, within SMa0196

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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105,048 + SMa0190 0.77 -0.0
105,061 + SMa0190 0.80 +0.7
105,061 + SMa0190 0.80 +0.3
105,062 - SMa0190 0.80 +3.3
105,092 - SMa0190 0.84 +1.0
105,131 + -0.0
105,131 + -1.6
105,131 + -0.7
105,131 + -1.0
105,187 + +0.7
105,255 - +1.9
105,255 - +0.3
105,259 + +0.4
105,259 + -0.0
105,259 + +0.2
105,259 + +0.0
105,260 - +0.6
105,260 - +2.0
105,260 - -0.2
105,260 - -0.0
105,260 - +0.1
105,264 - -0.5
105,305 + +0.4
105,365 - -1.4
105,394 + -0.1
105,394 + -0.2
105,394 + -1.8
105,450 + +0.3
105,479 + +0.3
105,479 + +0.5
105,479 + -2.7
105,479 + +0.3
105,479 + +0.7
105,479 + +0.6
105,479 + -0.9
105,480 - +0.1
105,480 - -0.2
105,483 + +0.9
105,549 + +0.1
105,550 - +2.3
105,666 - -0.3
105,666 - -0.7
105,675 + -0.2
105,728 + -2.3
105,728 + +1.2
105,729 - -2.4
105,729 - +1.1
105,729 - -0.4
105,737 + -0.3
105,737 + -0.1
105,777 - -1.9
105,875 - SMa0191 0.14 +1.0
105,976 + SMa0191 0.33 -0.0
105,977 - SMa0191 0.34 +0.1
106,080 + SMa0191 0.53 -2.0
106,109 + SMa0191 0.58 -0.7
106,110 - SMa0191 0.59 +2.5
106,110 - SMa0191 0.59 -0.3
106,167 + SMa0191 0.69 +0.4
106,167 + SMa0191 0.69 -2.5
106,167 + SMa0191 0.69 -0.7
106,167 + SMa0191 0.69 -0.5
106,250 + SMa0191 0.85 -0.8
106,347 + +0.4
106,449 - SMa0193 0.38 -0.2
106,735 + +0.6
106,841 + +0.2
106,950 + -0.3
106,981 - -0.4
106,989 + +0.2
107,243 + SMa0196 0.32 -1.4

Or see this region's nucleotide sequence