Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0179 and SMa0180 are separated by 117 nucleotides
SMa0179: SMa0179 - LysR family transcriptional regulator, at 98,400 to 99,317
SMa0179
SMa0180: SMa0180 - epimerase, at 99,435 to 100,307
SMa0180
Position (kb) 98
99
100 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 97.558 kb on + strand at 97.559 kb on - strand at 97.563 kb on - strand at 97.563 kb on - strand at 97.563 kb on - strand at 97.606 kb on - strand at 97.646 kb on + strand at 97.647 kb on - strand at 97.647 kb on - strand at 97.677 kb on + strand at 97.698 kb on + strand at 97.698 kb on + strand at 97.698 kb on + strand at 97.699 kb on - strand at 97.751 kb on - strand at 97.865 kb on - strand at 97.866 kb on + strand at 97.867 kb on - strand at 97.867 kb on - strand at 97.867 kb on - strand at 97.877 kb on + strand at 97.877 kb on + strand at 97.878 kb on - strand at 97.954 kb on - strand at 97.954 kb on - strand at 97.972 kb on - strand at 98.056 kb on - strand at 98.056 kb on - strand at 98.056 kb on - strand at 98.063 kb on + strand at 98.063 kb on + strand at 98.063 kb on + strand at 98.093 kb on + strand at 98.093 kb on + strand at 98.094 kb on - strand at 98.095 kb on + strand at 98.096 kb on - strand at 98.208 kb on + strand at 98.324 kb on + strand at 98.373 kb on + strand at 98.516 kb on - strand, within SMa0179 at 98.553 kb on + strand, within SMa0179 at 98.564 kb on + strand, within SMa0179 at 98.672 kb on + strand, within SMa0179 at 98.673 kb on - strand, within SMa0179 at 98.790 kb on + strand, within SMa0179 at 98.844 kb on - strand, within SMa0179 at 99.106 kb on + strand, within SMa0179 at 99.368 kb on + strand at 99.466 kb on + strand at 99.466 kb on + strand at 99.467 kb on - strand at 99.938 kb on + strand, within SMa0180 at 99.938 kb on + strand, within SMa0180 at 100.035 kb on + strand, within SMa0180 at 100.036 kb on - strand, within SMa0180 at 100.041 kb on + strand, within SMa0180 at 100.041 kb on + strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 97,558 + -0.9 97,559 - +0.2 97,563 - -1.9 97,563 - -1.2 97,563 - -0.1 97,606 - +0.3 97,646 + -0.6 97,647 - +0.5 97,647 - -0.7 97,677 + +0.3 97,698 + -0.3 97,698 + +0.5 97,698 + +0.3 97,699 - -0.2 97,751 - +1.0 97,865 - -0.7 97,866 + +1.0 97,867 - -3.1 97,867 - +0.5 97,867 - +0.1 97,877 + +0.3 97,877 + -0.3 97,878 - -1.4 97,954 - +0.1 97,954 - -4.2 97,972 - +1.0 98,056 - -3.3 98,056 - +1.2 98,056 - +0.7 98,063 + -2.3 98,063 + +0.4 98,063 + +1.4 98,093 + -0.6 98,093 + -2.9 98,094 - +0.3 98,095 + -0.9 98,096 - -1.2 98,208 + -1.8 98,324 + -0.1 98,373 + -0.6 98,516 - SMa0179 0.13 -0.6 98,553 + SMa0179 0.17 -0.1 98,564 + SMa0179 0.18 +0.9 98,672 + SMa0179 0.30 -1.1 98,673 - SMa0179 0.30 -1.8 98,790 + SMa0179 0.42 -1.6 98,844 - SMa0179 0.48 +0.2 99,106 + SMa0179 0.77 -2.0 99,368 + +1.6 99,466 + -3.0 99,466 + +0.5 99,467 - +0.5 99,938 + SMa0180 0.58 -1.6 99,938 + SMa0180 0.58 -0.6 100,035 + SMa0180 0.69 -0.2 100,036 - SMa0180 0.69 +0.4 100,041 + SMa0180 0.69 -1.8 100,041 + SMa0180 0.69 +0.8 100,042 - SMa0180 0.70 +1.4 100,042 - SMa0180 0.70 -0.1 100,042 - SMa0180 0.70 +0.3 100,042 - SMa0180 0.70 -0.6 100,042 - SMa0180 0.70 -1.5 100,042 - SMa0180 0.70 -0.4
Or see this region's nucleotide sequence