Strain Fitness in Sinorhizobium meliloti 1021 around SMa0072

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0070 and SMa0072 overlap by 4 nucleotidesSMa0072 and SMa0074 are separated by 7 nucleotidesSMa0074 and SMa0077 overlap by 1 nucleotides SMa0070: SMa0070 - ABC transporter permease, at 37,353 to 38,336 SMa0070 SMa0072: SMa0072 - ABC transporter ATP-binding protein, at 38,333 to 39,064 SMa0072 SMa0074: SMa0074 - 3-ketoacyl-ACP reductase, at 39,072 to 39,830 SMa0074 SMa0077: SMa0077 - hypothetical protein, at 39,830 to 40,717 SMa0077 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 37.686 kb on + strand, within SMa0070at 37.686 kb on + strand, within SMa0070at 37.686 kb on + strand, within SMa0070at 37.686 kb on + strand, within SMa0070at 37.827 kb on + strand, within SMa0070at 37.827 kb on + strand, within SMa0070at 37.827 kb on + strand, within SMa0070at 37.828 kb on - strand, within SMa0070at 37.828 kb on - strand, within SMa0070at 37.828 kb on - strand, within SMa0070at 38.377 kb on + strandat 38.377 kb on + strandat 38.377 kb on + strandat 38.378 kb on - strandat 38.378 kb on - strandat 38.378 kb on - strandat 38.378 kb on - strandat 38.538 kb on + strand, within SMa0072at 38.538 kb on + strand, within SMa0072at 38.588 kb on + strand, within SMa0072at 38.588 kb on + strand, within SMa0072at 38.589 kb on - strand, within SMa0072at 38.589 kb on - strand, within SMa0072at 38.589 kb on - strand, within SMa0072at 38.594 kb on + strand, within SMa0072at 38.595 kb on - strand, within SMa0072at 39.255 kb on + strand, within SMa0074at 39.255 kb on + strand, within SMa0074at 39.256 kb on - strand, within SMa0074at 39.276 kb on - strand, within SMa0074at 39.280 kb on + strand, within SMa0074at 39.281 kb on - strand, within SMa0074at 39.281 kb on - strand, within SMa0074at 39.305 kb on + strand, within SMa0074at 39.400 kb on - strand, within SMa0074at 39.534 kb on + strand, within SMa0074at 39.534 kb on + strand, within SMa0074at 39.534 kb on + strand, within SMa0074at 39.535 kb on - strand, within SMa0074at 39.535 kb on - strand, within SMa0074at 39.543 kb on + strand, within SMa0074at 39.543 kb on + strand, within SMa0074at 39.543 kb on + strand, within SMa0074at 39.544 kb on - strand, within SMa0074at 39.544 kb on - strand, within SMa0074at 39.547 kb on + strand, within SMa0074at 39.547 kb on + strand, within SMa0074at 39.548 kb on - strand, within SMa0074at 39.548 kb on - strand, within SMa0074at 39.690 kb on + strand, within SMa0074at 39.690 kb on + strand, within SMa0074at 39.691 kb on - strand, within SMa0074at 39.691 kb on - strand, within SMa0074at 39.691 kb on - strand, within SMa0074at 39.691 kb on - strand, within SMa0074

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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37,686 + SMa0070 0.34 -0.5
37,686 + SMa0070 0.34 -1.1
37,686 + SMa0070 0.34 +0.8
37,686 + SMa0070 0.34 +1.1
37,827 + SMa0070 0.48 -0.4
37,827 + SMa0070 0.48 -0.4
37,827 + SMa0070 0.48 -0.2
37,828 - SMa0070 0.48 -1.8
37,828 - SMa0070 0.48 +0.0
37,828 - SMa0070 0.48 -1.8
38,377 + -0.7
38,377 + -1.2
38,377 + -0.3
38,378 - -1.9
38,378 - -0.5
38,378 - +0.2
38,378 - +1.4
38,538 + SMa0072 0.28 +2.4
38,538 + SMa0072 0.28 +0.4
38,588 + SMa0072 0.35 +1.0
38,588 + SMa0072 0.35 +0.5
38,589 - SMa0072 0.35 +0.7
38,589 - SMa0072 0.35 +0.2
38,589 - SMa0072 0.35 +1.3
38,594 + SMa0072 0.36 -0.6
38,595 - SMa0072 0.36 +0.1
39,255 + SMa0074 0.24 -0.4
39,255 + SMa0074 0.24 +1.2
39,256 - SMa0074 0.24 -0.3
39,276 - SMa0074 0.27 -1.1
39,280 + SMa0074 0.27 -0.5
39,281 - SMa0074 0.28 +0.2
39,281 - SMa0074 0.28 -0.2
39,305 + SMa0074 0.31 -1.2
39,400 - SMa0074 0.43 -2.0
39,534 + SMa0074 0.61 +0.5
39,534 + SMa0074 0.61 +0.8
39,534 + SMa0074 0.61 +0.4
39,535 - SMa0074 0.61 +0.3
39,535 - SMa0074 0.61 -0.7
39,543 + SMa0074 0.62 +0.3
39,543 + SMa0074 0.62 -0.9
39,543 + SMa0074 0.62 +0.1
39,544 - SMa0074 0.62 -1.2
39,544 - SMa0074 0.62 -0.5
39,547 + SMa0074 0.63 -0.2
39,547 + SMa0074 0.63 -0.2
39,548 - SMa0074 0.63 +0.4
39,548 - SMa0074 0.63 +0.0
39,690 + SMa0074 0.81 +0.5
39,690 + SMa0074 0.81 -1.2
39,691 - SMa0074 0.82 -1.7
39,691 - SMa0074 0.82 -1.9
39,691 - SMa0074 0.82 -0.2
39,691 - SMa0074 0.82 +0.3

Or see this region's nucleotide sequence