Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21424 and SM_b21425 are separated by 46 nucleotides SM_b21425 and SM_b21426 are separated by 1 nucleotides SM_b21426 and SM_b21427 overlap by 1 nucleotides SM_b21427 and SM_b21428 are separated by 155 nucleotides
SM_b21424: SM_b21424 - esterase or acylase, at 1,355,223 to 1,356,959
_b21424
SM_b21425: SM_b21425 - hypothetical protein, at 1,357,006 to 1,357,782
_b21425
SM_b21426: SM_b21426 - sugar nucleotide oxidoreductaseepimerase, at 1,357,784 to 1,358,626
_b21426
SM_b21427: SM_b21427 - acetyltransferase, at 1,358,626 to 1,359,114
_b21427
SM_b21428: SM_b21428 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,359,270 to 1,359,833
_b21428
Position (kb)
1357
1358
1359 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1356.921 kb on + strand at 1356.921 kb on + strand at 1356.922 kb on - strand at 1356.957 kb on + strand at 1356.958 kb on - strand at 1356.962 kb on + strand at 1356.962 kb on + strand at 1356.962 kb on + strand at 1356.962 kb on + strand at 1356.963 kb on - strand at 1356.963 kb on - strand at 1357.100 kb on + strand, within SM_b21425 at 1357.100 kb on + strand, within SM_b21425 at 1357.202 kb on + strand, within SM_b21425 at 1357.229 kb on + strand, within SM_b21425 at 1357.263 kb on + strand, within SM_b21425 at 1357.263 kb on + strand, within SM_b21425 at 1357.264 kb on - strand, within SM_b21425 at 1357.264 kb on - strand, within SM_b21425 at 1357.282 kb on + strand, within SM_b21425 at 1357.282 kb on + strand, within SM_b21425 at 1357.283 kb on - strand, within SM_b21425 at 1357.283 kb on - strand, within SM_b21425 at 1357.283 kb on - strand, within SM_b21425 at 1357.283 kb on - strand, within SM_b21425 at 1357.283 kb on - strand, within SM_b21425 at 1357.656 kb on + strand, within SM_b21425 at 1357.656 kb on + strand, within SM_b21425 at 1357.657 kb on - strand, within SM_b21425 at 1357.657 kb on - strand, within SM_b21425 at 1357.664 kb on + strand, within SM_b21425 at 1357.664 kb on + strand, within SM_b21425 at 1357.664 kb on + strand, within SM_b21425 at 1357.678 kb on - strand, within SM_b21425 at 1357.865 kb on + strand at 1357.958 kb on + strand, within SM_b21426 at 1357.959 kb on - strand, within SM_b21426 at 1358.034 kb on + strand, within SM_b21426 at 1358.034 kb on + strand, within SM_b21426 at 1358.034 kb on + strand, within SM_b21426 at 1358.035 kb on - strand, within SM_b21426 at 1358.099 kb on - strand, within SM_b21426 at 1358.100 kb on + strand, within SM_b21426 at 1358.100 kb on + strand, within SM_b21426 at 1358.101 kb on - strand, within SM_b21426 at 1358.101 kb on - strand, within SM_b21426 at 1358.289 kb on + strand, within SM_b21426 at 1358.289 kb on + strand, within SM_b21426 at 1358.289 kb on + strand, within SM_b21426 at 1358.341 kb on + strand, within SM_b21426 at 1358.342 kb on - strand, within SM_b21426 at 1358.359 kb on - strand, within SM_b21426 at 1358.379 kb on + strand, within SM_b21426 at 1358.379 kb on + strand at 1358.380 kb on - strand, within SM_b21426 at 1358.380 kb on - strand, within SM_b21426 at 1358.380 kb on - strand, within SM_b21426 at 1358.380 kb on - strand, within SM_b21426 at 1358.490 kb on + strand, within SM_b21426 at 1358.490 kb on + strand, within SM_b21426 at 1358.490 kb on + strand, within SM_b21426 at 1358.490 kb on + strand, within SM_b21426 at 1358.490 kb on + strand, within SM_b21426 at 1358.527 kb on + strand, within SM_b21426 at 1358.527 kb on + strand, within SM_b21426 at 1358.875 kb on - strand, within SM_b21427 at 1358.905 kb on + strand, within SM_b21427 at 1358.906 kb on - strand, within SM_b21427 at 1358.927 kb on + strand, within SM_b21427 at 1358.927 kb on + strand, within SM_b21427 at 1358.927 kb on + strand, within SM_b21427 at 1358.928 kb on - strand, within SM_b21427 at 1358.952 kb on - strand, within SM_b21427 at 1358.952 kb on - strand, within SM_b21427 at 1358.952 kb on - strand, within SM_b21427 at 1359.196 kb on + strand at 1359.196 kb on + strand at 1359.197 kb on - strand at 1359.227 kb on + strand at 1359.227 kb on + strand at 1359.228 kb on - strand at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 1,356,921 + +1.2 1,356,921 + +1.0 1,356,922 - +0.6 1,356,957 + +0.0 1,356,958 - -0.2 1,356,962 + +0.4 1,356,962 + -0.7 1,356,962 + +0.8 1,356,962 + -0.4 1,356,963 - +0.9 1,356,963 - -2.7 1,357,100 + SM_b21425 0.12 +1.0 1,357,100 + SM_b21425 0.12 +1.7 1,357,202 + SM_b21425 0.25 +1.0 1,357,229 + SM_b21425 0.29 +0.6 1,357,263 + SM_b21425 0.33 +1.0 1,357,263 + SM_b21425 0.33 -0.2 1,357,264 - SM_b21425 0.33 +1.1 1,357,264 - SM_b21425 0.33 -0.2 1,357,282 + SM_b21425 0.36 +0.5 1,357,282 + SM_b21425 0.36 +0.8 1,357,283 - SM_b21425 0.36 +0.2 1,357,283 - SM_b21425 0.36 +0.1 1,357,283 - SM_b21425 0.36 -0.3 1,357,283 - SM_b21425 0.36 -0.7 1,357,283 - SM_b21425 0.36 +0.7 1,357,656 + SM_b21425 0.84 +0.0 1,357,656 + SM_b21425 0.84 -1.1 1,357,657 - SM_b21425 0.84 +0.3 1,357,657 - SM_b21425 0.84 +0.1 1,357,664 + SM_b21425 0.85 -0.1 1,357,664 + SM_b21425 0.85 -0.0 1,357,664 + SM_b21425 0.85 +1.0 1,357,678 - SM_b21425 0.86 +1.7 1,357,865 + +1.0 1,357,958 + SM_b21426 0.21 +0.8 1,357,959 - SM_b21426 0.21 +0.1 1,358,034 + SM_b21426 0.30 +0.6 1,358,034 + SM_b21426 0.30 +0.5 1,358,034 + SM_b21426 0.30 +0.5 1,358,035 - SM_b21426 0.30 -1.1 1,358,099 - SM_b21426 0.37 +0.6 1,358,100 + SM_b21426 0.37 +3.1 1,358,100 + SM_b21426 0.37 +0.3 1,358,101 - SM_b21426 0.38 +0.4 1,358,101 - SM_b21426 0.38 -0.3 1,358,289 + SM_b21426 0.60 +0.5 1,358,289 + SM_b21426 0.60 +1.1 1,358,289 + SM_b21426 0.60 -0.4 1,358,341 + SM_b21426 0.66 +0.8 1,358,342 - SM_b21426 0.66 -1.9 1,358,359 - SM_b21426 0.68 +1.4 1,358,379 + SM_b21426 0.71 +0.3 1,358,379 + +1.3 1,358,380 - SM_b21426 0.71 +0.9 1,358,380 - SM_b21426 0.71 +0.9 1,358,380 - SM_b21426 0.71 +0.8 1,358,380 - SM_b21426 0.71 +0.1 1,358,490 + SM_b21426 0.84 -0.5 1,358,490 + SM_b21426 0.84 -0.3 1,358,490 + SM_b21426 0.84 +1.5 1,358,490 + SM_b21426 0.84 -0.1 1,358,490 + SM_b21426 0.84 +0.4 1,358,527 + SM_b21426 0.88 +0.6 1,358,527 + SM_b21426 0.88 +0.1 1,358,875 - SM_b21427 0.51 -0.2 1,358,905 + SM_b21427 0.57 -0.2 1,358,906 - SM_b21427 0.57 +0.6 1,358,927 + SM_b21427 0.62 +2.0 1,358,927 + SM_b21427 0.62 -0.2 1,358,927 + SM_b21427 0.62 +0.8 1,358,928 - SM_b21427 0.62 +0.5 1,358,952 - SM_b21427 0.67 -0.2 1,358,952 - SM_b21427 0.67 -1.6 1,358,952 - SM_b21427 0.67 -0.9 1,359,196 + +1.5 1,359,196 + +0.8 1,359,197 - -1.0 1,359,227 + +0.1 1,359,227 + +0.3 1,359,228 - -0.2 1,359,585 + SM_b21428 0.56 +0.6 1,359,585 + SM_b21428 0.56 +1.9 1,359,585 + SM_b21428 0.56 -1.9 1,359,585 + SM_b21428 0.56 -0.4 1,359,585 + SM_b21428 0.56 +1.6 1,359,586 - SM_b21428 0.56 -0.1 1,359,586 - SM_b21428 0.56 -0.7 1,359,586 - SM_b21428 0.56 +0.3 1,359,586 - SM_b21428 0.56 +0.2
Or see this region's nucleotide sequence