Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21369

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21367 and SM_b21368 overlap by 4 nucleotidesSM_b21368 and SM_b21369 are separated by 3 nucleotidesSM_b21369 and SM_b21370 overlap by 4 nucleotides SM_b21367: SM_b21367 - cytochrome c class I protein, at 1,030,460 to 1,031,584 _b21367 SM_b21368: SM_b21368 - cytochrome c oxidase subunit II, at 1,031,581 to 1,032,564 _b21368 SM_b21369: SM_b21369 - hypothetical protein, at 1,032,568 to 1,033,641 _b21369 SM_b21370: SM_b21370 - cytochrome c oxidase subunit I, at 1,033,638 to 1,036,163 _b21370 Position (kb) 1032 1033 1034Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1031.864 kb on - strand, within SM_b21368at 1031.872 kb on + strand, within SM_b21368at 1031.872 kb on + strand, within SM_b21368at 1031.872 kb on + strand, within SM_b21368at 1031.872 kb on + strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.877 kb on + strand, within SM_b21368at 1031.877 kb on + strand, within SM_b21368at 1031.878 kb on - strand, within SM_b21368at 1031.878 kb on - strand, within SM_b21368at 1031.963 kb on - strand, within SM_b21368at 1031.963 kb on - strand, within SM_b21368at 1031.963 kb on - strand, within SM_b21368at 1032.057 kb on + strand, within SM_b21368at 1032.057 kb on + strand, within SM_b21368at 1032.058 kb on - strand, within SM_b21368at 1032.175 kb on + strand, within SM_b21368at 1032.208 kb on + strand, within SM_b21368at 1032.366 kb on + strand, within SM_b21368at 1032.567 kb on + strandat 1032.567 kb on + strandat 1032.567 kb on + strandat 1032.567 kb on + strandat 1032.568 kb on - strandat 1032.568 kb on - strandat 1032.568 kb on - strandat 1032.665 kb on - strandat 1033.146 kb on - strand, within SM_b21369at 1033.210 kb on + strandat 1033.211 kb on - strand, within SM_b21369at 1033.348 kb on + strand, within SM_b21369at 1033.348 kb on + strand, within SM_b21369at 1033.348 kb on + strand, within SM_b21369at 1033.348 kb on + strand, within SM_b21369at 1033.349 kb on - strand, within SM_b21369at 1033.349 kb on - strand, within SM_b21369at 1033.349 kb on - strand, within SM_b21369at 1033.349 kb on - strand, within SM_b21369at 1033.349 kb on - strand, within SM_b21369at 1033.350 kb on + strand, within SM_b21369at 1033.350 kb on + strand, within SM_b21369at 1033.350 kb on + strand, within SM_b21369at 1033.350 kb on + strand, within SM_b21369at 1033.350 kb on + strand, within SM_b21369at 1033.351 kb on - strand, within SM_b21369at 1033.351 kb on - strand, within SM_b21369at 1033.351 kb on - strand, within SM_b21369at 1033.389 kb on - strand, within SM_b21369at 1033.389 kb on - strand, within SM_b21369at 1033.555 kb on + strandat 1033.607 kb on - strandat 1033.745 kb on + strandat 1033.745 kb on + strandat 1033.869 kb on + strandat 1033.870 kb on - strandat 1034.019 kb on + strand, within SM_b21370at 1034.019 kb on + strand, within SM_b21370at 1034.019 kb on + strand, within SM_b21370at 1034.058 kb on + strand, within SM_b21370at 1034.058 kb on + strand, within SM_b21370at 1034.091 kb on + strand, within SM_b21370at 1034.092 kb on - strand, within SM_b21370at 1034.115 kb on + strand, within SM_b21370at 1034.116 kb on - strand, within SM_b21370at 1034.116 kb on - strand, within SM_b21370at 1034.437 kb on - strand, within SM_b21370at 1034.437 kb on - strand, within SM_b21370at 1034.480 kb on - strand, within SM_b21370at 1034.512 kb on - strand, within SM_b21370

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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1,031,864 - SM_b21368 0.29 +1.0
1,031,872 + SM_b21368 0.30 -0.7
1,031,872 + SM_b21368 0.30 +0.4
1,031,872 + SM_b21368 0.30 +1.7
1,031,872 + SM_b21368 0.30 -0.2
1,031,873 - SM_b21368 0.30 +0.3
1,031,873 - SM_b21368 0.30 -2.2
1,031,873 - SM_b21368 0.30 -0.6
1,031,873 - SM_b21368 0.30 -0.2
1,031,873 - SM_b21368 0.30 +0.5
1,031,873 - SM_b21368 0.30 -0.8
1,031,873 - SM_b21368 0.30 +0.0
1,031,873 - SM_b21368 0.30 +0.2
1,031,877 + SM_b21368 0.30 +1.0
1,031,877 + SM_b21368 0.30 +0.5
1,031,878 - SM_b21368 0.30 -0.4
1,031,878 - SM_b21368 0.30 -0.4
1,031,963 - SM_b21368 0.39 -0.2
1,031,963 - SM_b21368 0.39 +0.7
1,031,963 - SM_b21368 0.39 -1.0
1,032,057 + SM_b21368 0.48 +1.2
1,032,057 + SM_b21368 0.48 -0.2
1,032,058 - SM_b21368 0.48 -0.5
1,032,175 + SM_b21368 0.60 -0.6
1,032,208 + SM_b21368 0.64 +0.5
1,032,366 + SM_b21368 0.80 -1.6
1,032,567 + -0.6
1,032,567 + +0.5
1,032,567 + -0.6
1,032,567 + -1.0
1,032,568 - -1.1
1,032,568 - -0.2
1,032,568 - -1.1
1,032,665 - -0.7
1,033,146 - SM_b21369 0.54 +0.8
1,033,210 + +1.2
1,033,211 - SM_b21369 0.60 -0.1
1,033,348 + SM_b21369 0.73 -1.0
1,033,348 + SM_b21369 0.73 -0.1
1,033,348 + SM_b21369 0.73 +0.4
1,033,348 + SM_b21369 0.73 +1.6
1,033,349 - SM_b21369 0.73 +0.6
1,033,349 - SM_b21369 0.73 -1.3
1,033,349 - SM_b21369 0.73 +0.4
1,033,349 - SM_b21369 0.73 -0.4
1,033,349 - SM_b21369 0.73 +1.5
1,033,350 + SM_b21369 0.73 +0.1
1,033,350 + SM_b21369 0.73 -0.4
1,033,350 + SM_b21369 0.73 +3.2
1,033,350 + SM_b21369 0.73 +0.2
1,033,350 + SM_b21369 0.73 +0.3
1,033,351 - SM_b21369 0.73 -0.4
1,033,351 - SM_b21369 0.73 +0.3
1,033,351 - SM_b21369 0.73 -2.9
1,033,389 - SM_b21369 0.76 +0.7
1,033,389 - SM_b21369 0.76 -0.3
1,033,555 + +1.4
1,033,607 - -2.1
1,033,745 + -2.0
1,033,745 + +0.1
1,033,869 + +0.0
1,033,870 - -0.1
1,034,019 + SM_b21370 0.15 -0.1
1,034,019 + SM_b21370 0.15 +0.0
1,034,019 + SM_b21370 0.15 +1.2
1,034,058 + SM_b21370 0.17 -2.3
1,034,058 + SM_b21370 0.17 -0.0
1,034,091 + SM_b21370 0.18 -0.5
1,034,092 - SM_b21370 0.18 -0.2
1,034,115 + SM_b21370 0.19 +0.5
1,034,116 - SM_b21370 0.19 +0.9
1,034,116 - SM_b21370 0.19 +0.2
1,034,437 - SM_b21370 0.32 -2.3
1,034,437 - SM_b21370 0.32 -0.3
1,034,480 - SM_b21370 0.33 +2.2
1,034,512 - SM_b21370 0.35 -0.0

Or see this region's nucleotide sequence