Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21367 and SM_b21368 overlap by 4 nucleotides SM_b21368 and SM_b21369 are separated by 3 nucleotides SM_b21369 and SM_b21370 overlap by 4 nucleotides
SM_b21367: SM_b21367 - cytochrome c class I protein, at 1,030,460 to 1,031,584
_b21367
SM_b21368: SM_b21368 - cytochrome c oxidase subunit II, at 1,031,581 to 1,032,564
_b21368
SM_b21369: SM_b21369 - hypothetical protein, at 1,032,568 to 1,033,641
_b21369
SM_b21370: SM_b21370 - cytochrome c oxidase subunit I, at 1,033,638 to 1,036,163
_b21370
Position (kb)
1032
1033
1034 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1031.864 kb on - strand, within SM_b21368 at 1031.872 kb on + strand, within SM_b21368 at 1031.872 kb on + strand, within SM_b21368 at 1031.872 kb on + strand, within SM_b21368 at 1031.872 kb on + strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.877 kb on + strand, within SM_b21368 at 1031.877 kb on + strand, within SM_b21368 at 1031.878 kb on - strand, within SM_b21368 at 1031.878 kb on - strand, within SM_b21368 at 1031.963 kb on - strand, within SM_b21368 at 1031.963 kb on - strand, within SM_b21368 at 1031.963 kb on - strand, within SM_b21368 at 1032.057 kb on + strand, within SM_b21368 at 1032.057 kb on + strand, within SM_b21368 at 1032.058 kb on - strand, within SM_b21368 at 1032.175 kb on + strand, within SM_b21368 at 1032.208 kb on + strand, within SM_b21368 at 1032.366 kb on + strand, within SM_b21368 at 1032.567 kb on + strand at 1032.567 kb on + strand at 1032.567 kb on + strand at 1032.567 kb on + strand at 1032.568 kb on - strand at 1032.568 kb on - strand at 1032.568 kb on - strand at 1032.665 kb on - strand at 1033.146 kb on - strand, within SM_b21369 at 1033.210 kb on + strand at 1033.211 kb on - strand, within SM_b21369 at 1033.348 kb on + strand, within SM_b21369 at 1033.348 kb on + strand, within SM_b21369 at 1033.348 kb on + strand, within SM_b21369 at 1033.348 kb on + strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.351 kb on - strand, within SM_b21369 at 1033.351 kb on - strand, within SM_b21369 at 1033.351 kb on - strand, within SM_b21369 at 1033.389 kb on - strand, within SM_b21369 at 1033.389 kb on - strand, within SM_b21369 at 1033.555 kb on + strand at 1033.607 kb on - strand at 1033.745 kb on + strand at 1033.745 kb on + strand at 1033.869 kb on + strand at 1033.870 kb on - strand at 1034.019 kb on + strand, within SM_b21370 at 1034.019 kb on + strand, within SM_b21370 at 1034.019 kb on + strand, within SM_b21370 at 1034.058 kb on + strand, within SM_b21370 at 1034.058 kb on + strand, within SM_b21370 at 1034.091 kb on + strand, within SM_b21370 at 1034.092 kb on - strand, within SM_b21370 at 1034.115 kb on + strand, within SM_b21370 at 1034.116 kb on - strand, within SM_b21370 at 1034.116 kb on - strand, within SM_b21370 at 1034.437 kb on - strand, within SM_b21370 at 1034.437 kb on - strand, within SM_b21370 at 1034.480 kb on - strand, within SM_b21370 at 1034.512 kb on - strand, within SM_b21370
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 1,031,864 - SM_b21368 0.29 +1.0 1,031,872 + SM_b21368 0.30 -0.7 1,031,872 + SM_b21368 0.30 +0.4 1,031,872 + SM_b21368 0.30 +1.7 1,031,872 + SM_b21368 0.30 -0.2 1,031,873 - SM_b21368 0.30 +0.3 1,031,873 - SM_b21368 0.30 -2.2 1,031,873 - SM_b21368 0.30 -0.6 1,031,873 - SM_b21368 0.30 -0.2 1,031,873 - SM_b21368 0.30 +0.5 1,031,873 - SM_b21368 0.30 -0.8 1,031,873 - SM_b21368 0.30 +0.0 1,031,873 - SM_b21368 0.30 +0.2 1,031,877 + SM_b21368 0.30 +1.0 1,031,877 + SM_b21368 0.30 +0.5 1,031,878 - SM_b21368 0.30 -0.4 1,031,878 - SM_b21368 0.30 -0.4 1,031,963 - SM_b21368 0.39 -0.2 1,031,963 - SM_b21368 0.39 +0.7 1,031,963 - SM_b21368 0.39 -1.0 1,032,057 + SM_b21368 0.48 +1.2 1,032,057 + SM_b21368 0.48 -0.2 1,032,058 - SM_b21368 0.48 -0.5 1,032,175 + SM_b21368 0.60 -0.6 1,032,208 + SM_b21368 0.64 +0.5 1,032,366 + SM_b21368 0.80 -1.6 1,032,567 + -0.6 1,032,567 + +0.5 1,032,567 + -0.6 1,032,567 + -1.0 1,032,568 - -1.1 1,032,568 - -0.2 1,032,568 - -1.1 1,032,665 - -0.7 1,033,146 - SM_b21369 0.54 +0.8 1,033,210 + +1.2 1,033,211 - SM_b21369 0.60 -0.1 1,033,348 + SM_b21369 0.73 -1.0 1,033,348 + SM_b21369 0.73 -0.1 1,033,348 + SM_b21369 0.73 +0.4 1,033,348 + SM_b21369 0.73 +1.6 1,033,349 - SM_b21369 0.73 +0.6 1,033,349 - SM_b21369 0.73 -1.3 1,033,349 - SM_b21369 0.73 +0.4 1,033,349 - SM_b21369 0.73 -0.4 1,033,349 - SM_b21369 0.73 +1.5 1,033,350 + SM_b21369 0.73 +0.1 1,033,350 + SM_b21369 0.73 -0.4 1,033,350 + SM_b21369 0.73 +3.2 1,033,350 + SM_b21369 0.73 +0.2 1,033,350 + SM_b21369 0.73 +0.3 1,033,351 - SM_b21369 0.73 -0.4 1,033,351 - SM_b21369 0.73 +0.3 1,033,351 - SM_b21369 0.73 -2.9 1,033,389 - SM_b21369 0.76 +0.7 1,033,389 - SM_b21369 0.76 -0.3 1,033,555 + +1.4 1,033,607 - -2.1 1,033,745 + -2.0 1,033,745 + +0.1 1,033,869 + +0.0 1,033,870 - -0.1 1,034,019 + SM_b21370 0.15 -0.1 1,034,019 + SM_b21370 0.15 +0.0 1,034,019 + SM_b21370 0.15 +1.2 1,034,058 + SM_b21370 0.17 -2.3 1,034,058 + SM_b21370 0.17 -0.0 1,034,091 + SM_b21370 0.18 -0.5 1,034,092 - SM_b21370 0.18 -0.2 1,034,115 + SM_b21370 0.19 +0.5 1,034,116 - SM_b21370 0.19 +0.9 1,034,116 - SM_b21370 0.19 +0.2 1,034,437 - SM_b21370 0.32 -2.3 1,034,437 - SM_b21370 0.32 -0.3 1,034,480 - SM_b21370 0.33 +2.2 1,034,512 - SM_b21370 0.35 -0.0
Or see this region's nucleotide sequence