Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21340

Experiment: nitrate 40 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21338 and SM_b21339 are separated by 1 nucleotidesSM_b21339 and SM_b21340 overlap by 28 nucleotidesSM_b21340 and SM_b21341 are separated by 29 nucleotidesSM_b21341 and SM_b21342 are separated by 53 nucleotides SM_b21338: SM_b21338 - molybdopterin-binding protein, at 1,004,552 to 1,005,457 _b21338 SM_b21339: SM_b21339 - N-terminal part of the catalytic subunit of an oxidoreductase like aldehyde oxidase or xanthine dehydrogenase, at 1,005,459 to 1,005,791 _b21339 SM_b21340: SM_b21340 - hypothetical protein, at 1,005,764 to 1,006,831 _b21340 SM_b21341: SM_b21341 - hypothetical protein, at 1,006,861 to 1,007,709 _b21341 SM_b21342: SM_b21342 - sugar uptake ABC transporter permease, at 1,007,763 to 1,008,761 _b21342 Position (kb) 1005 1006 1007Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1004.777 kb on - strandat 1004.777 kb on - strand, within SM_b21338at 1004.860 kb on - strand, within SM_b21338at 1004.860 kb on - strand, within SM_b21338at 1004.872 kb on + strand, within SM_b21338at 1004.919 kb on - strand, within SM_b21338at 1005.131 kb on + strand, within SM_b21338at 1005.200 kb on - strand, within SM_b21338at 1005.261 kb on - strand, within SM_b21338at 1005.585 kb on - strand, within SM_b21339at 1005.607 kb on + strand, within SM_b21339at 1005.659 kb on + strand, within SM_b21339at 1005.660 kb on - strand, within SM_b21339at 1005.663 kb on + strand, within SM_b21339at 1005.663 kb on + strand, within SM_b21339at 1005.663 kb on + strand, within SM_b21339at 1005.664 kb on - strand, within SM_b21339at 1005.664 kb on - strand, within SM_b21339at 1005.664 kb on - strand, within SM_b21339at 1005.664 kb on - strand, within SM_b21339at 1005.669 kb on + strand, within SM_b21339at 1005.669 kb on + strand, within SM_b21339at 1005.670 kb on - strand, within SM_b21339at 1005.782 kb on - strandat 1005.782 kb on - strandat 1005.782 kb on - strandat 1006.002 kb on - strand, within SM_b21340at 1006.002 kb on - strand, within SM_b21340at 1006.002 kb on - strand, within SM_b21340at 1006.002 kb on - strand, within SM_b21340at 1006.002 kb on - strand, within SM_b21340at 1006.291 kb on + strand, within SM_b21340at 1006.362 kb on - strand, within SM_b21340at 1006.362 kb on - strand, within SM_b21340at 1006.474 kb on + strand, within SM_b21340at 1006.475 kb on - strand, within SM_b21340at 1006.572 kb on - strand, within SM_b21340at 1006.621 kb on + strand, within SM_b21340at 1006.621 kb on + strand, within SM_b21340at 1006.622 kb on - strand, within SM_b21340at 1006.622 kb on - strand, within SM_b21340at 1006.748 kb on + strandat 1006.982 kb on + strand, within SM_b21341at 1006.982 kb on + strand, within SM_b21341at 1007.256 kb on + strand, within SM_b21341at 1007.361 kb on - strand, within SM_b21341at 1007.409 kb on - strand, within SM_b21341

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
remove
1,004,777 - +1.6
1,004,777 - SM_b21338 0.25 -1.6
1,004,860 - SM_b21338 0.34 -0.2
1,004,860 - SM_b21338 0.34 +0.5
1,004,872 + SM_b21338 0.35 +0.2
1,004,919 - SM_b21338 0.41 -1.4
1,005,131 + SM_b21338 0.64 +3.2
1,005,200 - SM_b21338 0.72 -0.8
1,005,261 - SM_b21338 0.78 -0.5
1,005,585 - SM_b21339 0.38 +0.0
1,005,607 + SM_b21339 0.44 -0.5
1,005,659 + SM_b21339 0.60 +0.7
1,005,660 - SM_b21339 0.60 +0.6
1,005,663 + SM_b21339 0.61 -0.3
1,005,663 + SM_b21339 0.61 +0.2
1,005,663 + SM_b21339 0.61 -0.4
1,005,664 - SM_b21339 0.62 +0.3
1,005,664 - SM_b21339 0.62 +1.6
1,005,664 - SM_b21339 0.62 +0.4
1,005,664 - SM_b21339 0.62 -0.3
1,005,669 + SM_b21339 0.63 -1.1
1,005,669 + SM_b21339 0.63 -1.5
1,005,670 - SM_b21339 0.63 -1.6
1,005,782 - +1.5
1,005,782 - +1.5
1,005,782 - -1.8
1,006,002 - SM_b21340 0.22 +2.2
1,006,002 - SM_b21340 0.22 +0.6
1,006,002 - SM_b21340 0.22 -0.4
1,006,002 - SM_b21340 0.22 -0.4
1,006,002 - SM_b21340 0.22 +0.1
1,006,291 + SM_b21340 0.49 -0.2
1,006,362 - SM_b21340 0.56 -1.0
1,006,362 - SM_b21340 0.56 -4.2
1,006,474 + SM_b21340 0.66 -0.5
1,006,475 - SM_b21340 0.67 +0.4
1,006,572 - SM_b21340 0.76 +1.9
1,006,621 + SM_b21340 0.80 -2.3
1,006,621 + SM_b21340 0.80 -2.4
1,006,622 - SM_b21340 0.80 +0.2
1,006,622 - SM_b21340 0.80 +1.2
1,006,748 + -0.3
1,006,982 + SM_b21341 0.14 +0.4
1,006,982 + SM_b21341 0.14 -0.5
1,007,256 + SM_b21341 0.47 +0.1
1,007,361 - SM_b21341 0.59 +0.4
1,007,409 - SM_b21341 0.65 -1.1

Or see this region's nucleotide sequence