Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21314 and SM_b21315 are separated by 274 nucleotides SM_b21315 and SM_b21316 overlap by 4 nucleotides
SM_b21314: SM_b21314 - secreted calcium-binding protein, at 979,583 to 980,242
_b21314
SM_b21315: SM_b21315 - HlyD family protein secretion protein, at 980,517 to 981,938
_b21315
SM_b21316: SM_b21316 - ABC transporter ATP-binding protein/permease, at 981,935 to 983,704
_b21316
Position (kb) 980
981
982 Strain fitness (log2 ratio) -1
0
1
2
3 at 979.581 kb on + strand at 979.582 kb on - strand at 979.600 kb on - strand at 979.703 kb on - strand, within SM_b21314 at 979.747 kb on + strand, within SM_b21314 at 979.747 kb on + strand, within SM_b21314 at 979.757 kb on + strand, within SM_b21314 at 979.758 kb on - strand, within SM_b21314 at 979.832 kb on - strand, within SM_b21314 at 979.832 kb on - strand, within SM_b21314 at 979.987 kb on - strand, within SM_b21314 at 980.020 kb on + strand, within SM_b21314 at 980.020 kb on + strand, within SM_b21314 at 980.020 kb on + strand, within SM_b21314 at 980.040 kb on + strand, within SM_b21314 at 980.040 kb on + strand, within SM_b21314 at 980.041 kb on - strand, within SM_b21314 at 980.041 kb on - strand, within SM_b21314 at 980.734 kb on + strand, within SM_b21315 at 980.734 kb on + strand, within SM_b21315 at 980.734 kb on + strand, within SM_b21315 at 980.734 kb on + strand at 980.735 kb on - strand, within SM_b21315 at 980.735 kb on - strand, within SM_b21315 at 980.735 kb on - strand, within SM_b21315 at 980.735 kb on - strand, within SM_b21315 at 980.735 kb on - strand, within SM_b21315 at 980.735 kb on - strand, within SM_b21315 at 980.739 kb on + strand, within SM_b21315 at 980.740 kb on - strand, within SM_b21315 at 980.740 kb on - strand, within SM_b21315 at 980.776 kb on + strand, within SM_b21315 at 980.814 kb on + strand, within SM_b21315 at 980.814 kb on + strand, within SM_b21315 at 980.814 kb on + strand, within SM_b21315 at 980.815 kb on - strand, within SM_b21315 at 980.815 kb on - strand, within SM_b21315 at 981.237 kb on - strand, within SM_b21315 at 981.319 kb on + strand, within SM_b21315 at 981.571 kb on - strand, within SM_b21315 at 981.659 kb on + strand, within SM_b21315 at 981.660 kb on - strand, within SM_b21315 at 982.197 kb on + strand, within SM_b21316 at 982.271 kb on - strand, within SM_b21316 at 982.271 kb on - strand, within SM_b21316 at 982.271 kb on - strand, within SM_b21316 at 982.271 kb on - strand, within SM_b21316 at 982.417 kb on - strand, within SM_b21316 at 982.417 kb on - strand, within SM_b21316 at 982.455 kb on + strand, within SM_b21316 at 982.455 kb on + strand, within SM_b21316 at 982.456 kb on - strand, within SM_b21316 at 982.558 kb on + strand, within SM_b21316 at 982.632 kb on + strand, within SM_b21316
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 979,581 + +1.5 979,582 - +0.5 979,600 - -1.3 979,703 - SM_b21314 0.18 +0.8 979,747 + SM_b21314 0.25 -1.2 979,747 + SM_b21314 0.25 -0.5 979,757 + SM_b21314 0.26 +1.5 979,758 - SM_b21314 0.27 -0.6 979,832 - SM_b21314 0.38 -0.6 979,832 - SM_b21314 0.38 +0.1 979,987 - SM_b21314 0.61 -0.2 980,020 + SM_b21314 0.66 +0.1 980,020 + SM_b21314 0.66 -1.4 980,020 + SM_b21314 0.66 -0.5 980,040 + SM_b21314 0.69 -0.0 980,040 + SM_b21314 0.69 -0.5 980,041 - SM_b21314 0.69 +0.2 980,041 - SM_b21314 0.69 -0.0 980,734 + SM_b21315 0.15 -0.3 980,734 + SM_b21315 0.15 -0.2 980,734 + SM_b21315 0.15 -0.5 980,734 + -0.4 980,735 - SM_b21315 0.15 +1.6 980,735 - SM_b21315 0.15 -0.8 980,735 - SM_b21315 0.15 +0.8 980,735 - SM_b21315 0.15 +0.5 980,735 - SM_b21315 0.15 +0.3 980,735 - SM_b21315 0.15 +0.0 980,739 + SM_b21315 0.16 -0.0 980,740 - SM_b21315 0.16 +0.7 980,740 - SM_b21315 0.16 +1.5 980,776 + SM_b21315 0.18 +2.8 980,814 + SM_b21315 0.21 +0.3 980,814 + SM_b21315 0.21 -0.6 980,814 + SM_b21315 0.21 +1.4 980,815 - SM_b21315 0.21 +0.8 980,815 - SM_b21315 0.21 -0.3 981,237 - SM_b21315 0.51 -1.3 981,319 + SM_b21315 0.56 -0.4 981,571 - SM_b21315 0.74 +0.6 981,659 + SM_b21315 0.80 +0.8 981,660 - SM_b21315 0.80 -0.6 982,197 + SM_b21316 0.15 +0.1 982,271 - SM_b21316 0.19 -0.7 982,271 - SM_b21316 0.19 -0.6 982,271 - SM_b21316 0.19 -0.6 982,271 - SM_b21316 0.19 -0.5 982,417 - SM_b21316 0.27 +0.6 982,417 - SM_b21316 0.27 +0.5 982,455 + SM_b21316 0.29 -0.2 982,455 + SM_b21316 0.29 +0.1 982,456 - SM_b21316 0.29 +2.3 982,558 + SM_b21316 0.35 -0.9 982,632 + SM_b21316 0.39 -0.8
Or see this region's nucleotide sequence