Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21229 and SM_b21230 are separated by 263 nucleotides SM_b21230 and SM_b21231 are separated by 68 nucleotides
SM_b21229: SM_b21229 - calcium-binding exported protein, at 793,076 to 794,239
_b21229
SM_b21230: SM_b21230 - glycosyltransferase, at 794,503 to 795,585
_b21230
SM_b21231: SM_b21231 - glycosyltransferase, at 795,654 to 796,808
_b21231
Position (kb) 794
795
796 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 793.648 kb on - strand, within SM_b21229 at 793.749 kb on + strand, within SM_b21229 at 793.749 kb on + strand, within SM_b21229 at 793.750 kb on - strand, within SM_b21229 at 793.750 kb on - strand, within SM_b21229 at 793.750 kb on - strand, within SM_b21229 at 793.750 kb on - strand, within SM_b21229 at 793.751 kb on + strand, within SM_b21229 at 793.751 kb on + strand, within SM_b21229 at 793.752 kb on - strand, within SM_b21229 at 793.752 kb on - strand, within SM_b21229 at 793.814 kb on + strand, within SM_b21229 at 793.851 kb on + strand, within SM_b21229 at 793.882 kb on + strand, within SM_b21229 at 793.882 kb on + strand, within SM_b21229 at 793.883 kb on - strand, within SM_b21229 at 793.883 kb on - strand, within SM_b21229 at 793.884 kb on + strand, within SM_b21229 at 793.884 kb on + strand, within SM_b21229 at 793.884 kb on + strand, within SM_b21229 at 793.884 kb on + strand, within SM_b21229 at 793.885 kb on - strand, within SM_b21229 at 793.885 kb on - strand, within SM_b21229 at 793.988 kb on + strand, within SM_b21229 at 793.988 kb on + strand, within SM_b21229 at 793.988 kb on + strand, within SM_b21229 at 794.073 kb on + strand, within SM_b21229 at 794.074 kb on - strand, within SM_b21229 at 794.170 kb on - strand at 794.253 kb on - strand at 794.309 kb on + strand at 794.363 kb on + strand at 794.405 kb on + strand at 794.406 kb on - strand at 794.597 kb on + strand at 794.598 kb on - strand at 794.666 kb on - strand, within SM_b21230 at 794.810 kb on + strand, within SM_b21230 at 794.810 kb on + strand, within SM_b21230 at 794.811 kb on - strand, within SM_b21230 at 795.016 kb on + strand, within SM_b21230 at 795.111 kb on - strand, within SM_b21230 at 795.116 kb on + strand, within SM_b21230 at 795.117 kb on - strand, within SM_b21230 at 795.152 kb on + strand, within SM_b21230 at 795.153 kb on - strand, within SM_b21230 at 795.157 kb on + strand, within SM_b21230 at 795.158 kb on - strand, within SM_b21230 at 795.179 kb on - strand, within SM_b21230 at 795.220 kb on - strand, within SM_b21230 at 795.220 kb on - strand, within SM_b21230 at 795.320 kb on + strand, within SM_b21230 at 795.320 kb on + strand, within SM_b21230 at 795.320 kb on + strand, within SM_b21230 at 795.321 kb on - strand, within SM_b21230 at 795.416 kb on - strand, within SM_b21230 at 795.425 kb on + strand, within SM_b21230 at 795.426 kb on - strand, within SM_b21230 at 795.487 kb on + strand at 795.488 kb on - strand at 795.580 kb on + strand at 795.580 kb on + strand at 795.580 kb on + strand at 795.580 kb on + strand at 795.581 kb on - strand at 795.581 kb on - strand at 795.581 kb on - strand at 795.581 kb on - strand at 795.596 kb on + strand at 795.596 kb on + strand at 795.597 kb on - strand at 795.597 kb on - strand at 795.820 kb on - strand, within SM_b21231 at 795.940 kb on + strand, within SM_b21231 at 795.940 kb on + strand, within SM_b21231 at 796.141 kb on + strand, within SM_b21231 at 796.142 kb on - strand, within SM_b21231 at 796.321 kb on + strand, within SM_b21231 at 796.322 kb on - strand, within SM_b21231 at 796.361 kb on - strand, within SM_b21231 at 796.379 kb on - strand, within SM_b21231 at 796.379 kb on - strand, within SM_b21231 at 796.426 kb on - strand, within SM_b21231 at 796.426 kb on - strand, within SM_b21231 at 796.428 kb on - strand, within SM_b21231 at 796.428 kb on - strand, within SM_b21231 at 796.495 kb on + strand, within SM_b21231 at 796.495 kb on + strand, within SM_b21231 at 796.495 kb on + strand, within SM_b21231 at 796.495 kb on + strand, within SM_b21231 at 796.496 kb on - strand, within SM_b21231 at 796.496 kb on - strand, within SM_b21231 at 796.496 kb on - strand, within SM_b21231 at 796.496 kb on - strand, within SM_b21231 at 796.514 kb on + strand, within SM_b21231 at 796.514 kb on + strand, within SM_b21231 at 796.516 kb on + strand, within SM_b21231 at 796.517 kb on - strand, within SM_b21231 at 796.517 kb on - strand, within SM_b21231 at 796.517 kb on - strand, within SM_b21231
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 793,648 - SM_b21229 0.49 -0.8 793,749 + SM_b21229 0.58 -0.0 793,749 + SM_b21229 0.58 -0.7 793,750 - SM_b21229 0.58 +0.2 793,750 - SM_b21229 0.58 -0.5 793,750 - SM_b21229 0.58 -0.1 793,750 - SM_b21229 0.58 -0.3 793,751 + SM_b21229 0.58 +0.9 793,751 + SM_b21229 0.58 +0.0 793,752 - SM_b21229 0.58 -1.0 793,752 - SM_b21229 0.58 -0.0 793,814 + SM_b21229 0.63 -0.1 793,851 + SM_b21229 0.67 -0.2 793,882 + SM_b21229 0.69 +0.2 793,882 + SM_b21229 0.69 +1.5 793,883 - SM_b21229 0.69 -0.7 793,883 - SM_b21229 0.69 -0.0 793,884 + SM_b21229 0.69 +1.1 793,884 + SM_b21229 0.69 +3.3 793,884 + SM_b21229 0.69 +1.3 793,884 + SM_b21229 0.69 -0.2 793,885 - SM_b21229 0.70 -0.2 793,885 - SM_b21229 0.70 +0.1 793,988 + SM_b21229 0.78 -1.4 793,988 + SM_b21229 0.78 +0.2 793,988 + SM_b21229 0.78 +0.6 794,073 + SM_b21229 0.86 +0.3 794,074 - SM_b21229 0.86 -0.7 794,170 - +1.2 794,253 - -0.3 794,309 + +0.5 794,363 + -0.8 794,405 + +0.9 794,406 - +0.8 794,597 + +0.1 794,598 - -0.1 794,666 - SM_b21230 0.15 -0.8 794,810 + SM_b21230 0.28 +0.6 794,810 + SM_b21230 0.28 -0.0 794,811 - SM_b21230 0.28 +1.2 795,016 + SM_b21230 0.47 +1.7 795,111 - SM_b21230 0.56 +1.3 795,116 + SM_b21230 0.57 -0.5 795,117 - SM_b21230 0.57 +4.0 795,152 + SM_b21230 0.60 +2.0 795,153 - SM_b21230 0.60 +0.4 795,157 + SM_b21230 0.60 -0.7 795,158 - SM_b21230 0.60 +0.7 795,179 - SM_b21230 0.62 -0.5 795,220 - SM_b21230 0.66 +0.1 795,220 - SM_b21230 0.66 +0.1 795,320 + SM_b21230 0.75 +0.6 795,320 + SM_b21230 0.75 -0.1 795,320 + SM_b21230 0.75 -0.4 795,321 - SM_b21230 0.76 -0.6 795,416 - SM_b21230 0.84 -1.7 795,425 + SM_b21230 0.85 +0.4 795,426 - SM_b21230 0.85 +0.1 795,487 + +0.2 795,488 - -3.5 795,580 + -0.6 795,580 + +1.2 795,580 + -0.3 795,580 + +0.1 795,581 - +0.2 795,581 - -0.4 795,581 - -2.7 795,581 - -0.3 795,596 + +0.5 795,596 + +1.4 795,597 - +1.3 795,597 - -1.0 795,820 - SM_b21231 0.14 -2.5 795,940 + SM_b21231 0.25 -1.0 795,940 + SM_b21231 0.25 -1.9 796,141 + SM_b21231 0.42 +1.4 796,142 - SM_b21231 0.42 +1.1 796,321 + SM_b21231 0.58 -0.2 796,322 - SM_b21231 0.58 -1.8 796,361 - SM_b21231 0.61 -0.4 796,379 - SM_b21231 0.63 +0.6 796,379 - SM_b21231 0.63 +0.8 796,426 - SM_b21231 0.67 +1.0 796,426 - SM_b21231 0.67 +0.2 796,428 - SM_b21231 0.67 -0.8 796,428 - SM_b21231 0.67 -0.1 796,495 + SM_b21231 0.73 +0.5 796,495 + SM_b21231 0.73 +0.2 796,495 + SM_b21231 0.73 -0.3 796,495 + SM_b21231 0.73 +0.4 796,496 - SM_b21231 0.73 +0.1 796,496 - SM_b21231 0.73 -0.5 796,496 - SM_b21231 0.73 -0.4 796,496 - SM_b21231 0.73 -1.7 796,514 + SM_b21231 0.74 +0.1 796,514 + SM_b21231 0.74 -0.8 796,516 + SM_b21231 0.75 -1.8 796,517 - SM_b21231 0.75 -1.2 796,517 - SM_b21231 0.75 -0.1 796,517 - SM_b21231 0.75 +0.5
Or see this region's nucleotide sequence