Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21204 and SM_b21205 are separated by 1 nucleotides SM_b21205 and SM_b21206 overlap by 4 nucleotides
SM_b21204: SM_b21204 - ABC transporter permease, at 955,955 to 957,067
_b21204
SM_b21205: SM_b21205 - ABC transporter permease, at 957,069 to 958,223
_b21205
SM_b21206: SM_b21206 - ABC transporter ATP-binding protein, at 958,220 to 959,968
_b21206
Position (kb) 957
958
959 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 956.094 kb on + strand, within SM_b21204 at 956.095 kb on - strand, within SM_b21204 at 956.274 kb on + strand, within SM_b21204 at 956.350 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.551 kb on - strand, within SM_b21204 at 956.551 kb on - strand, within SM_b21204 at 956.771 kb on + strand, within SM_b21204 at 956.835 kb on - strand, within SM_b21204 at 956.949 kb on + strand, within SM_b21204 at 957.202 kb on - strand, within SM_b21205 at 957.208 kb on + strand, within SM_b21205 at 957.209 kb on - strand, within SM_b21205 at 957.226 kb on + strand, within SM_b21205 at 957.226 kb on + strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.409 kb on + strand, within SM_b21205 at 957.410 kb on - strand, within SM_b21205 at 957.502 kb on + strand, within SM_b21205 at 957.778 kb on + strand, within SM_b21205 at 957.779 kb on - strand, within SM_b21205 at 958.192 kb on + strand at 958.193 kb on - strand at 958.357 kb on - strand at 958.359 kb on - strand at 958.447 kb on + strand, within SM_b21206 at 958.666 kb on - strand, within SM_b21206 at 958.666 kb on - strand, within SM_b21206 at 958.713 kb on + strand, within SM_b21206 at 958.713 kb on + strand, within SM_b21206 at 958.714 kb on - strand, within SM_b21206 at 958.737 kb on + strand, within SM_b21206 at 958.737 kb on + strand, within SM_b21206 at 958.737 kb on + strand, within SM_b21206 at 958.737 kb on + strand, within SM_b21206 at 958.738 kb on - strand, within SM_b21206 at 958.738 kb on - strand, within SM_b21206 at 958.742 kb on + strand, within SM_b21206 at 958.900 kb on + strand, within SM_b21206 at 959.047 kb on + strand, within SM_b21206
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 956,094 + SM_b21204 0.12 +0.2 956,095 - SM_b21204 0.13 +0.5 956,274 + SM_b21204 0.29 -1.8 956,350 + SM_b21204 0.35 +0.5 956,352 + SM_b21204 0.36 -0.1 956,352 + SM_b21204 0.36 +0.2 956,352 + SM_b21204 0.36 -0.0 956,352 + SM_b21204 0.36 -0.6 956,352 + SM_b21204 0.36 +0.4 956,352 + SM_b21204 0.36 -0.9 956,353 - SM_b21204 0.36 +1.0 956,353 - SM_b21204 0.36 -1.2 956,353 - SM_b21204 0.36 -1.5 956,551 - SM_b21204 0.54 +0.4 956,551 - SM_b21204 0.54 -1.4 956,771 + SM_b21204 0.73 +1.4 956,835 - SM_b21204 0.79 -0.1 956,949 + SM_b21204 0.89 -0.2 957,202 - SM_b21205 0.12 -0.2 957,208 + SM_b21205 0.12 +0.6 957,209 - SM_b21205 0.12 -1.0 957,226 + SM_b21205 0.14 +0.8 957,226 + SM_b21205 0.14 +0.3 957,227 - SM_b21205 0.14 -2.4 957,227 - SM_b21205 0.14 -0.5 957,227 - SM_b21205 0.14 -2.9 957,227 - SM_b21205 0.14 -1.0 957,409 + SM_b21205 0.29 -1.3 957,410 - SM_b21205 0.30 -1.6 957,502 + SM_b21205 0.37 -0.2 957,778 + SM_b21205 0.61 -1.2 957,779 - SM_b21205 0.61 +0.0 958,192 + -1.2 958,193 - -0.2 958,357 - -0.1 958,359 - +0.1 958,447 + SM_b21206 0.13 -1.1 958,666 - SM_b21206 0.26 +0.0 958,666 - SM_b21206 0.26 +1.0 958,713 + SM_b21206 0.28 -2.2 958,713 + SM_b21206 0.28 -0.5 958,714 - SM_b21206 0.28 -2.6 958,737 + SM_b21206 0.30 -2.0 958,737 + SM_b21206 0.30 -0.4 958,737 + SM_b21206 0.30 -1.8 958,737 + SM_b21206 0.30 +0.5 958,738 - SM_b21206 0.30 +0.4 958,738 - SM_b21206 0.30 +0.7 958,742 + SM_b21206 0.30 +0.1 958,900 + SM_b21206 0.39 +1.6 959,047 + SM_b21206 0.47 +0.1
Or see this region's nucleotide sequence