Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21196

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21192 and SM_b21196 are separated by 644 nucleotidesSM_b21196 and SM_b21197 are separated by 51 nucleotidesSM_b21197 and SM_b21198 overlap by 8 nucleotides SM_b21192: SM_b21192 - fructose-1,6-bisphosphate aldolase, at 943,330 to 944,373 _b21192 SM_b21196: SM_b21196 - oligopeptide uptake ABC transporter substrate-binding protein precursor, at 945,018 to 946,616 _b21196 SM_b21197: SM_b21197 - oligopeptide uptake ABC transporter permease, at 946,668 to 947,591 _b21197 SM_b21198: SM_b21198 - oligopeptide uptake ABC transporter permease, at 947,584 to 948,714 _b21198 Position (kb) 945 946 947Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 944.156 kb on + strand, within SM_b21192at 944.156 kb on + strand, within SM_b21192at 944.157 kb on - strand, within SM_b21192at 944.283 kb on + strandat 944.284 kb on - strandat 944.285 kb on + strandat 944.322 kb on - strandat 944.377 kb on + strandat 944.378 kb on - strandat 944.426 kb on + strandat 944.426 kb on + strandat 944.427 kb on - strandat 944.427 kb on - strandat 944.427 kb on - strandat 944.427 kb on - strandat 944.517 kb on - strandat 944.796 kb on + strandat 945.103 kb on + strandat 945.103 kb on + strandat 945.192 kb on + strand, within SM_b21196at 945.193 kb on - strand, within SM_b21196at 945.210 kb on + strand, within SM_b21196at 945.210 kb on + strand, within SM_b21196at 945.210 kb on + strand, within SM_b21196at 945.210 kb on + strand, within SM_b21196at 945.212 kb on - strand, within SM_b21196at 945.279 kb on + strand, within SM_b21196at 945.280 kb on - strand, within SM_b21196at 945.390 kb on + strand, within SM_b21196at 945.391 kb on - strand, within SM_b21196at 945.497 kb on + strand, within SM_b21196at 945.497 kb on + strand, within SM_b21196at 945.687 kb on + strand, within SM_b21196at 945.792 kb on + strand, within SM_b21196at 945.793 kb on - strand, within SM_b21196at 945.834 kb on + strand, within SM_b21196at 945.834 kb on + strand, within SM_b21196at 945.834 kb on + strand, within SM_b21196at 945.873 kb on + strand, within SM_b21196at 945.873 kb on + strand, within SM_b21196at 945.873 kb on + strand, within SM_b21196at 945.874 kb on - strand, within SM_b21196at 945.874 kb on - strand, within SM_b21196at 945.874 kb on - strand, within SM_b21196at 945.876 kb on + strand, within SM_b21196at 945.876 kb on + strand, within SM_b21196at 945.876 kb on + strand, within SM_b21196at 945.877 kb on - strand, within SM_b21196at 945.877 kb on - strand, within SM_b21196at 945.877 kb on - strand, within SM_b21196at 945.879 kb on + strand, within SM_b21196at 945.880 kb on - strand, within SM_b21196at 945.907 kb on - strand, within SM_b21196at 945.907 kb on - strand, within SM_b21196at 945.908 kb on + strand, within SM_b21196at 945.909 kb on - strand, within SM_b21196at 946.002 kb on + strand, within SM_b21196at 946.029 kb on + strand, within SM_b21196at 946.029 kb on + strand, within SM_b21196at 946.030 kb on - strand, within SM_b21196at 946.264 kb on - strand, within SM_b21196at 946.264 kb on - strand, within SM_b21196at 946.269 kb on + strand, within SM_b21196at 946.269 kb on + strand, within SM_b21196at 946.367 kb on + strand, within SM_b21196at 946.368 kb on - strand, within SM_b21196at 946.368 kb on - strand, within SM_b21196at 946.381 kb on - strand, within SM_b21196at 946.428 kb on + strand, within SM_b21196at 946.824 kb on + strand, within SM_b21197at 946.824 kb on + strand, within SM_b21197at 946.824 kb on + strand, within SM_b21197at 946.854 kb on + strand, within SM_b21197at 946.855 kb on - strand, within SM_b21197at 946.855 kb on - strand, within SM_b21197at 946.855 kb on - strand, within SM_b21197at 946.855 kb on - strand, within SM_b21197at 946.859 kb on + strand, within SM_b21197at 946.859 kb on + strand, within SM_b21197at 946.860 kb on - strand, within SM_b21197at 946.863 kb on + strandat 946.863 kb on + strand, within SM_b21197at 946.863 kb on + strand, within SM_b21197at 946.864 kb on - strand, within SM_b21197at 946.864 kb on - strand, within SM_b21197at 946.864 kb on - strand, within SM_b21197at 946.864 kb on - strand, within SM_b21197at 946.864 kb on - strand, within SM_b21197at 946.864 kb on - strand, within SM_b21197at 946.867 kb on + strand, within SM_b21197at 946.867 kb on + strand, within SM_b21197at 946.867 kb on + strand, within SM_b21197at 946.868 kb on - strand, within SM_b21197at 946.902 kb on + strand, within SM_b21197at 946.902 kb on + strand, within SM_b21197at 946.902 kb on + strand, within SM_b21197at 946.903 kb on - strand, within SM_b21197at 946.908 kb on + strand, within SM_b21197at 946.908 kb on + strand, within SM_b21197at 946.908 kb on + strand, within SM_b21197at 946.985 kb on - strand, within SM_b21197at 946.985 kb on - strand, within SM_b21197at 947.302 kb on - strand, within SM_b21197at 947.370 kb on + strand, within SM_b21197at 947.371 kb on - strand, within SM_b21197at 947.371 kb on - strand, within SM_b21197at 947.432 kb on + strand, within SM_b21197at 947.433 kb on - strand, within SM_b21197at 947.433 kb on - strand, within SM_b21197at 947.435 kb on - strand, within SM_b21197at 947.435 kb on - strand, within SM_b21197at 947.452 kb on - strand, within SM_b21197at 947.452 kb on - strand, within SM_b21197at 947.481 kb on + strand, within SM_b21197at 947.481 kb on + strand, within SM_b21197at 947.482 kb on - strand, within SM_b21197at 947.483 kb on + strand, within SM_b21197at 947.483 kb on + strand, within SM_b21197at 947.483 kb on + strand, within SM_b21197at 947.483 kb on + strand, within SM_b21197at 947.484 kb on - strand, within SM_b21197at 947.484 kb on - strand, within SM_b21197at 947.484 kb on - strand, within SM_b21197at 947.484 kb on - strand, within SM_b21197at 947.549 kb on + strandat 947.590 kb on + strandat 947.592 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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944,156 + SM_b21192 0.79 -0.1
944,156 + SM_b21192 0.79 +0.9
944,157 - SM_b21192 0.79 +1.6
944,283 + +0.2
944,284 - +1.7
944,285 + +1.4
944,322 - +0.8
944,377 + -0.0
944,378 - +1.4
944,426 + +1.4
944,426 + +1.7
944,427 - +1.0
944,427 - +2.1
944,427 - +1.4
944,427 - +0.5
944,517 - +1.7
944,796 + -0.3
945,103 + +0.5
945,103 + +0.6
945,192 + SM_b21196 0.11 +0.6
945,193 - SM_b21196 0.11 +0.7
945,210 + SM_b21196 0.12 -1.6
945,210 + SM_b21196 0.12 +1.0
945,210 + SM_b21196 0.12 +0.0
945,210 + SM_b21196 0.12 -2.6
945,212 - SM_b21196 0.12 -0.8
945,279 + SM_b21196 0.16 +1.7
945,280 - SM_b21196 0.16 +0.3
945,390 + SM_b21196 0.23 +0.3
945,391 - SM_b21196 0.23 -0.2
945,497 + SM_b21196 0.30 +2.6
945,497 + SM_b21196 0.30 +0.3
945,687 + SM_b21196 0.42 +0.3
945,792 + SM_b21196 0.48 +0.1
945,793 - SM_b21196 0.48 -1.0
945,834 + SM_b21196 0.51 +0.5
945,834 + SM_b21196 0.51 +1.7
945,834 + SM_b21196 0.51 +1.9
945,873 + SM_b21196 0.53 +0.7
945,873 + SM_b21196 0.53 -0.4
945,873 + SM_b21196 0.53 +0.1
945,874 - SM_b21196 0.54 -0.0
945,874 - SM_b21196 0.54 +1.4
945,874 - SM_b21196 0.54 +0.4
945,876 + SM_b21196 0.54 +0.6
945,876 + SM_b21196 0.54 +1.7
945,876 + SM_b21196 0.54 +0.4
945,877 - SM_b21196 0.54 -0.0
945,877 - SM_b21196 0.54 -0.2
945,877 - SM_b21196 0.54 +0.7
945,879 + SM_b21196 0.54 +0.9
945,880 - SM_b21196 0.54 +0.7
945,907 - SM_b21196 0.56 -0.7
945,907 - SM_b21196 0.56 +0.2
945,908 + SM_b21196 0.56 +0.4
945,909 - SM_b21196 0.56 -0.2
946,002 + SM_b21196 0.62 +0.9
946,029 + SM_b21196 0.63 +0.4
946,029 + SM_b21196 0.63 -3.1
946,030 - SM_b21196 0.63 -1.2
946,264 - SM_b21196 0.78 +0.3
946,264 - SM_b21196 0.78 +0.8
946,269 + SM_b21196 0.78 +2.2
946,269 + SM_b21196 0.78 -0.4
946,367 + SM_b21196 0.84 -0.2
946,368 - SM_b21196 0.84 +0.1
946,368 - SM_b21196 0.84 +0.3
946,381 - SM_b21196 0.85 +0.9
946,428 + SM_b21196 0.88 +0.4
946,824 + SM_b21197 0.17 +0.5
946,824 + SM_b21197 0.17 -1.2
946,824 + SM_b21197 0.17 +0.6
946,854 + SM_b21197 0.20 +0.6
946,855 - SM_b21197 0.20 +1.0
946,855 - SM_b21197 0.20 -1.2
946,855 - SM_b21197 0.20 -1.9
946,855 - SM_b21197 0.20 -1.4
946,859 + SM_b21197 0.21 -1.2
946,859 + SM_b21197 0.21 -0.1
946,860 - SM_b21197 0.21 -0.1
946,863 + +0.8
946,863 + SM_b21197 0.21 -0.8
946,863 + SM_b21197 0.21 +1.3
946,864 - SM_b21197 0.21 +0.4
946,864 - SM_b21197 0.21 -0.3
946,864 - SM_b21197 0.21 +1.2
946,864 - SM_b21197 0.21 +0.5
946,864 - SM_b21197 0.21 +2.1
946,864 - SM_b21197 0.21 +0.9
946,867 + SM_b21197 0.22 +0.7
946,867 + SM_b21197 0.22 +0.0
946,867 + SM_b21197 0.22 +0.5
946,868 - SM_b21197 0.22 -0.7
946,902 + SM_b21197 0.25 -0.4
946,902 + SM_b21197 0.25 +0.4
946,902 + SM_b21197 0.25 +0.5
946,903 - SM_b21197 0.25 +1.0
946,908 + SM_b21197 0.26 +0.3
946,908 + SM_b21197 0.26 +0.1
946,908 + SM_b21197 0.26 -0.7
946,985 - SM_b21197 0.34 +1.2
946,985 - SM_b21197 0.34 +0.7
947,302 - SM_b21197 0.69 +2.3
947,370 + SM_b21197 0.76 +0.2
947,371 - SM_b21197 0.76 +0.7
947,371 - SM_b21197 0.76 +0.5
947,432 + SM_b21197 0.83 +1.0
947,433 - SM_b21197 0.83 +0.1
947,433 - SM_b21197 0.83 +0.2
947,435 - SM_b21197 0.83 -0.5
947,435 - SM_b21197 0.83 +1.5
947,452 - SM_b21197 0.85 -1.0
947,452 - SM_b21197 0.85 +0.8
947,481 + SM_b21197 0.88 +1.3
947,481 + SM_b21197 0.88 +0.1
947,482 - SM_b21197 0.88 -0.4
947,483 + SM_b21197 0.88 +1.1
947,483 + SM_b21197 0.88 -0.0
947,483 + SM_b21197 0.88 -0.1
947,483 + SM_b21197 0.88 -0.8
947,484 - SM_b21197 0.88 -0.1
947,484 - SM_b21197 0.88 +0.6
947,484 - SM_b21197 0.88 +0.2
947,484 - SM_b21197 0.88 +0.8
947,549 + +0.7
947,590 + +0.2
947,592 + +0.6

Or see this region's nucleotide sequence