Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21063

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21062 and SM_b21063 are separated by 58 nucleotidesSM_b21063 and SM_b21064 overlap by 4 nucleotidesSM_b21064 and SM_b21065 are separated by 15 nucleotides SM_b21062: SM_b21062 - NDP-hexose methyltransferase, at 695,813 to 697,012 _b21062 SM_b21063: SM_b21063 - nucleotide-binding protein, at 697,071 to 698,642 _b21063 SM_b21064: SM_b21064 - hypothetical protein, at 698,639 to 699,172 _b21064 SM_b21065: SM_b21065 - hypothetical protein, at 699,188 to 700,165 _b21065 Position (kb) 697 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 696.139 kb on + strand, within SM_b21062at 696.139 kb on + strand, within SM_b21062at 696.140 kb on - strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.361 kb on - strand, within SM_b21062at 696.433 kb on - strand, within SM_b21062at 696.437 kb on + strand, within SM_b21062at 696.437 kb on + strand, within SM_b21062at 696.461 kb on + strand, within SM_b21062at 696.461 kb on + strand, within SM_b21062at 696.497 kb on + strand, within SM_b21062at 696.513 kb on - strand, within SM_b21062at 696.596 kb on + strand, within SM_b21062at 696.597 kb on - strand, within SM_b21062at 696.845 kb on + strand, within SM_b21062at 696.846 kb on - strand, within SM_b21062at 696.948 kb on - strandat 696.948 kb on - strandat 697.171 kb on + strandat 697.172 kb on - strandat 697.172 kb on - strandat 697.188 kb on - strandat 697.188 kb on - strandat 697.199 kb on + strandat 697.232 kb on + strand, within SM_b21063at 697.300 kb on - strand, within SM_b21063at 697.420 kb on + strand, within SM_b21063at 697.529 kb on + strand, within SM_b21063at 697.534 kb on - strand, within SM_b21063at 697.534 kb on - strand, within SM_b21063at 697.534 kb on - strand, within SM_b21063at 697.554 kb on + strand, within SM_b21063at 697.578 kb on - strand, within SM_b21063at 697.719 kb on + strand, within SM_b21063at 697.720 kb on - strand, within SM_b21063at 697.722 kb on + strand, within SM_b21063at 697.722 kb on + strand, within SM_b21063at 697.755 kb on + strand, within SM_b21063at 697.755 kb on + strand, within SM_b21063at 697.756 kb on - strand, within SM_b21063at 697.758 kb on + strand, within SM_b21063at 697.851 kb on + strand, within SM_b21063at 697.873 kb on + strand, within SM_b21063at 697.918 kb on + strand, within SM_b21063at 697.918 kb on + strand, within SM_b21063at 697.919 kb on - strand, within SM_b21063at 697.919 kb on - strand, within SM_b21063at 698.156 kb on + strand, within SM_b21063at 698.157 kb on - strand, within SM_b21063at 698.340 kb on + strand, within SM_b21063at 698.358 kb on + strand, within SM_b21063at 698.359 kb on - strand, within SM_b21063at 698.359 kb on - strand, within SM_b21063at 698.411 kb on + strand, within SM_b21063at 698.412 kb on - strand, within SM_b21063at 698.412 kb on - strandat 698.425 kb on + strand, within SM_b21063at 698.425 kb on + strand, within SM_b21063at 698.714 kb on + strand, within SM_b21064at 698.761 kb on + strand, within SM_b21064at 698.761 kb on + strand, within SM_b21064at 698.765 kb on - strand, within SM_b21064at 698.817 kb on + strand, within SM_b21064at 698.840 kb on + strand, within SM_b21064at 698.840 kb on + strand, within SM_b21064at 698.841 kb on - strand, within SM_b21064at 698.858 kb on + strand, within SM_b21064at 698.874 kb on - strand, within SM_b21064at 698.874 kb on - strand, within SM_b21064at 699.280 kb on + strandat 699.281 kb on - strandat 699.306 kb on + strand, within SM_b21065at 699.307 kb on - strand, within SM_b21065at 699.307 kb on - strand, within SM_b21065at 699.307 kb on - strand, within SM_b21065at 699.351 kb on - strand, within SM_b21065at 699.372 kb on + strand, within SM_b21065at 699.373 kb on - strand, within SM_b21065at 699.415 kb on - strand, within SM_b21065at 699.586 kb on + strand, within SM_b21065at 699.636 kb on - strand, within SM_b21065at 699.636 kb on - strand, within SM_b21065

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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696,139 + SM_b21062 0.27 +0.0
696,139 + SM_b21062 0.27 -0.4
696,140 - SM_b21062 0.27 -0.1
696,143 + SM_b21062 0.28 -1.1
696,143 + SM_b21062 0.28 +1.2
696,143 + SM_b21062 0.28 -1.8
696,143 + SM_b21062 0.28 +1.4
696,143 + SM_b21062 0.28 -2.4
696,143 + SM_b21062 0.28 -1.4
696,143 + SM_b21062 0.28 +0.2
696,143 + SM_b21062 0.28 +0.3
696,144 - SM_b21062 0.28 -0.1
696,144 - SM_b21062 0.28 +0.3
696,144 - SM_b21062 0.28 -0.8
696,144 - SM_b21062 0.28 +0.6
696,144 - SM_b21062 0.28 -0.3
696,144 - SM_b21062 0.28 +0.3
696,144 - SM_b21062 0.28 -0.3
696,361 - SM_b21062 0.46 +0.9
696,433 - SM_b21062 0.52 -0.1
696,437 + SM_b21062 0.52 +1.9
696,437 + SM_b21062 0.52 -0.1
696,461 + SM_b21062 0.54 -2.1
696,461 + SM_b21062 0.54 +0.8
696,497 + SM_b21062 0.57 +0.1
696,513 - SM_b21062 0.58 -0.8
696,596 + SM_b21062 0.65 -0.3
696,597 - SM_b21062 0.65 -2.4
696,845 + SM_b21062 0.86 -0.4
696,846 - SM_b21062 0.86 +2.5
696,948 - +0.2
696,948 - +2.1
697,171 + -0.2
697,172 - +1.8
697,172 - -0.5
697,188 - +0.8
697,188 - -1.6
697,199 + +1.4
697,232 + SM_b21063 0.10 -0.2
697,300 - SM_b21063 0.15 +2.1
697,420 + SM_b21063 0.22 +0.3
697,529 + SM_b21063 0.29 -3.5
697,534 - SM_b21063 0.29 -1.8
697,534 - SM_b21063 0.29 -2.9
697,534 - SM_b21063 0.29 +0.6
697,554 + SM_b21063 0.31 -0.3
697,578 - SM_b21063 0.32 +1.7
697,719 + SM_b21063 0.41 +2.2
697,720 - SM_b21063 0.41 +0.8
697,722 + SM_b21063 0.41 -0.0
697,722 + SM_b21063 0.41 -1.0
697,755 + SM_b21063 0.44 -0.5
697,755 + SM_b21063 0.44 +0.2
697,756 - SM_b21063 0.44 +0.9
697,758 + SM_b21063 0.44 +0.1
697,851 + SM_b21063 0.50 +0.2
697,873 + SM_b21063 0.51 +0.7
697,918 + SM_b21063 0.54 +0.3
697,918 + SM_b21063 0.54 +0.4
697,919 - SM_b21063 0.54 -1.6
697,919 - SM_b21063 0.54 -0.6
698,156 + SM_b21063 0.69 +1.0
698,157 - SM_b21063 0.69 -2.8
698,340 + SM_b21063 0.81 -1.1
698,358 + SM_b21063 0.82 +0.4
698,359 - SM_b21063 0.82 +2.1
698,359 - SM_b21063 0.82 +0.2
698,411 + SM_b21063 0.85 +0.4
698,412 - SM_b21063 0.85 +1.0
698,412 - +1.2
698,425 + SM_b21063 0.86 -0.3
698,425 + SM_b21063 0.86 +1.5
698,714 + SM_b21064 0.14 -1.7
698,761 + SM_b21064 0.23 +0.4
698,761 + SM_b21064 0.23 -0.2
698,765 - SM_b21064 0.24 +0.9
698,817 + SM_b21064 0.33 +0.3
698,840 + SM_b21064 0.38 +1.2
698,840 + SM_b21064 0.38 -2.3
698,841 - SM_b21064 0.38 -0.2
698,858 + SM_b21064 0.41 +0.1
698,874 - SM_b21064 0.44 +2.5
698,874 - SM_b21064 0.44 +0.3
699,280 + -0.5
699,281 - +0.3
699,306 + SM_b21065 0.12 -0.5
699,307 - SM_b21065 0.12 -0.3
699,307 - SM_b21065 0.12 -1.5
699,307 - SM_b21065 0.12 +0.4
699,351 - SM_b21065 0.17 -0.2
699,372 + SM_b21065 0.19 +0.9
699,373 - SM_b21065 0.19 -0.2
699,415 - SM_b21065 0.23 +0.2
699,586 + SM_b21065 0.41 +0.1
699,636 - SM_b21065 0.46 -1.1
699,636 - SM_b21065 0.46 +0.0

Or see this region's nucleotide sequence