Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21054 and SM_b21055 are separated by 232 nucleotides SM_b21055 and SM_b21056 are separated by 134 nucleotides SM_b21056 and SM_b21057 overlap by 35 nucleotides SM_b21057 and SM_b21058 are separated by 52 nucleotides
SM_b21054: SM_b21054 - hypothetical protein, at 687,905 to 688,522
_b21054
SM_b21055: SM_b21055 - hypothetical protein, at 688,755 to 689,339
_b21055
SM_b21056: SM_b21056 - esterase, at 689,474 to 691,801
_b21056
SM_b21057: SM_b21057 - hypothetical protein, at 691,767 to 692,645
_b21057
SM_b21058: SM_b21058 - glucose-1-phosphate cytidylyltransferase, at 692,698 to 692,919
_b21058
Position (kb) 689
690
691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 688.518 kb on + strand at 688.518 kb on + strand at 688.519 kb on - strand at 688.519 kb on - strand at 688.519 kb on - strand at 688.519 kb on - strand at 688.545 kb on - strand at 688.565 kb on + strand at 688.566 kb on - strand at 688.566 kb on - strand at 688.613 kb on + strand at 688.614 kb on - strand at 688.641 kb on - strand at 688.641 kb on - strand at 688.680 kb on + strand at 688.718 kb on + strand at 689.059 kb on + strand, within SM_b21055 at 689.059 kb on + strand, within SM_b21055 at 689.188 kb on + strand, within SM_b21055 at 689.188 kb on + strand, within SM_b21055 at 689.189 kb on - strand, within SM_b21055 at 689.193 kb on - strand, within SM_b21055 at 689.369 kb on + strand at 689.410 kb on - strand at 689.427 kb on + strand at 689.468 kb on + strand at 689.469 kb on - strand at 689.469 kb on - strand at 689.469 kb on - strand at 689.475 kb on + strand at 689.530 kb on + strand at 689.530 kb on + strand at 689.726 kb on + strand, within SM_b21056 at 689.727 kb on - strand, within SM_b21056 at 689.752 kb on + strand, within SM_b21056 at 689.752 kb on + strand, within SM_b21056 at 689.753 kb on - strand, within SM_b21056 at 689.753 kb on - strand, within SM_b21056 at 690.057 kb on - strand, within SM_b21056 at 690.057 kb on - strand, within SM_b21056 at 690.086 kb on + strand, within SM_b21056 at 690.087 kb on - strand, within SM_b21056 at 690.087 kb on - strand, within SM_b21056 at 690.227 kb on + strand, within SM_b21056 at 690.227 kb on + strand, within SM_b21056 at 690.228 kb on - strand, within SM_b21056 at 690.573 kb on + strand, within SM_b21056 at 690.574 kb on - strand, within SM_b21056 at 690.583 kb on + strand, within SM_b21056 at 690.666 kb on + strand, within SM_b21056 at 690.666 kb on + strand, within SM_b21056 at 690.666 kb on + strand, within SM_b21056 at 690.666 kb on + strand, within SM_b21056 at 690.666 kb on + strand, within SM_b21056 at 690.667 kb on - strand, within SM_b21056 at 690.667 kb on - strand, within SM_b21056 at 690.667 kb on - strand, within SM_b21056 at 690.667 kb on - strand, within SM_b21056 at 690.670 kb on + strand, within SM_b21056 at 690.731 kb on + strand, within SM_b21056 at 690.772 kb on + strand, within SM_b21056 at 690.773 kb on - strand, within SM_b21056 at 690.774 kb on + strand, within SM_b21056 at 690.775 kb on - strand, within SM_b21056 at 690.958 kb on + strand, within SM_b21056 at 691.109 kb on + strand, within SM_b21056 at 691.109 kb on + strand, within SM_b21056 at 691.118 kb on + strand, within SM_b21056 at 691.119 kb on - strand, within SM_b21056 at 691.178 kb on + strand, within SM_b21056 at 691.178 kb on + strand, within SM_b21056 at 691.183 kb on + strand, within SM_b21056 at 691.184 kb on - strand, within SM_b21056 at 691.242 kb on - strand, within SM_b21056 at 691.242 kb on - strand, within SM_b21056 at 691.242 kb on - strand, within SM_b21056 at 691.272 kb on - strand, within SM_b21056 at 691.303 kb on + strand, within SM_b21056 at 691.304 kb on - strand, within SM_b21056 at 691.304 kb on - strand, within SM_b21056 at 691.403 kb on + strand, within SM_b21056 at 691.403 kb on + strand, within SM_b21056 at 691.403 kb on + strand, within SM_b21056 at 691.403 kb on + strand, within SM_b21056 at 691.404 kb on - strand, within SM_b21056 at 691.660 kb on + strand at 691.660 kb on + strand at 691.661 kb on - strand at 691.676 kb on + strand at 691.676 kb on + strand at 691.734 kb on - strand at 691.760 kb on + strand at 691.761 kb on - strand at 692.068 kb on + strand, within SM_b21057 at 692.068 kb on + strand, within SM_b21057 at 692.068 kb on + strand, within SM_b21057 at 692.069 kb on - strand, within SM_b21057 at 692.069 kb on - strand, within SM_b21057 at 692.069 kb on - strand, within SM_b21057 at 692.069 kb on - strand, within SM_b21057 at 692.147 kb on + strand, within SM_b21057 at 692.147 kb on + strand, within SM_b21057 at 692.228 kb on + strand, within SM_b21057 at 692.236 kb on + strand, within SM_b21057 at 692.274 kb on + strand, within SM_b21057 at 692.275 kb on - strand, within SM_b21057 at 692.275 kb on - strand, within SM_b21057 at 692.531 kb on + strand, within SM_b21057 at 692.531 kb on + strand, within SM_b21057 at 692.532 kb on - strand, within SM_b21057 at 692.648 kb on + strand at 692.648 kb on + strand at 692.710 kb on - strand at 692.710 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 688,518 + -0.1 688,518 + -0.2 688,519 - +0.3 688,519 - +1.6 688,519 - +3.1 688,519 - +0.1 688,545 - +1.5 688,565 + +0.5 688,566 - -0.2 688,566 - +0.4 688,613 + -3.1 688,614 - +3.2 688,641 - -0.1 688,641 - -0.6 688,680 + -0.1 688,718 + +0.2 689,059 + SM_b21055 0.52 +0.9 689,059 + SM_b21055 0.52 +0.4 689,188 + SM_b21055 0.74 +0.1 689,188 + SM_b21055 0.74 +0.6 689,189 - SM_b21055 0.74 +1.2 689,193 - SM_b21055 0.75 -0.3 689,369 + +1.6 689,410 - -0.7 689,427 + -0.4 689,468 + +0.1 689,469 - -1.8 689,469 - +0.7 689,469 - +0.1 689,475 + -1.1 689,530 + +0.0 689,530 + +0.2 689,726 + SM_b21056 0.11 +0.7 689,727 - SM_b21056 0.11 +0.0 689,752 + SM_b21056 0.12 +4.0 689,752 + SM_b21056 0.12 +0.3 689,753 - SM_b21056 0.12 -0.8 689,753 - SM_b21056 0.12 -0.1 690,057 - SM_b21056 0.25 +0.9 690,057 - SM_b21056 0.25 -2.3 690,086 + SM_b21056 0.26 +1.7 690,087 - SM_b21056 0.26 +0.1 690,087 - SM_b21056 0.26 -1.1 690,227 + SM_b21056 0.32 +2.8 690,227 + SM_b21056 0.32 +0.5 690,228 - SM_b21056 0.32 +0.8 690,573 + SM_b21056 0.47 -0.0 690,574 - SM_b21056 0.47 -1.4 690,583 + SM_b21056 0.48 +0.2 690,666 + SM_b21056 0.51 +0.9 690,666 + SM_b21056 0.51 -1.6 690,666 + SM_b21056 0.51 +0.2 690,666 + SM_b21056 0.51 +0.8 690,666 + SM_b21056 0.51 +1.2 690,667 - SM_b21056 0.51 +0.4 690,667 - SM_b21056 0.51 +0.6 690,667 - SM_b21056 0.51 -3.7 690,667 - SM_b21056 0.51 -1.0 690,670 + SM_b21056 0.51 +1.7 690,731 + SM_b21056 0.54 -2.6 690,772 + SM_b21056 0.56 +0.2 690,773 - SM_b21056 0.56 +1.6 690,774 + SM_b21056 0.56 -2.6 690,775 - SM_b21056 0.56 +0.3 690,958 + SM_b21056 0.64 +0.2 691,109 + SM_b21056 0.70 +0.2 691,109 + SM_b21056 0.70 +0.8 691,118 + SM_b21056 0.71 +0.4 691,119 - SM_b21056 0.71 +0.4 691,178 + SM_b21056 0.73 +2.5 691,178 + SM_b21056 0.73 -1.8 691,183 + SM_b21056 0.73 +0.3 691,184 - SM_b21056 0.73 -0.2 691,242 - SM_b21056 0.76 -0.3 691,242 - SM_b21056 0.76 -0.4 691,242 - SM_b21056 0.76 -0.5 691,272 - SM_b21056 0.77 -0.1 691,303 + SM_b21056 0.79 +0.5 691,304 - SM_b21056 0.79 +0.4 691,304 - SM_b21056 0.79 +0.1 691,403 + SM_b21056 0.83 +1.2 691,403 + SM_b21056 0.83 +0.2 691,403 + SM_b21056 0.83 +0.3 691,403 + SM_b21056 0.83 +0.4 691,404 - SM_b21056 0.83 +0.6 691,660 + +0.3 691,660 + -0.5 691,661 - -0.5 691,676 + -1.2 691,676 + +1.2 691,734 - -0.2 691,760 + +0.7 691,761 - -1.5 692,068 + SM_b21057 0.34 +0.4 692,068 + SM_b21057 0.34 -3.6 692,068 + SM_b21057 0.34 -1.2 692,069 - SM_b21057 0.34 -2.5 692,069 - SM_b21057 0.34 -0.0 692,069 - SM_b21057 0.34 +0.7 692,069 - SM_b21057 0.34 +0.2 692,147 + SM_b21057 0.43 -1.3 692,147 + SM_b21057 0.43 +0.0 692,228 + SM_b21057 0.52 +0.4 692,236 + SM_b21057 0.53 -0.3 692,274 + SM_b21057 0.58 +0.9 692,275 - SM_b21057 0.58 +0.9 692,275 - SM_b21057 0.58 -0.6 692,531 + SM_b21057 0.87 +1.2 692,531 + SM_b21057 0.87 -0.5 692,532 - SM_b21057 0.87 -0.4 692,648 + +0.4 692,648 + -0.9 692,710 - -1.1 692,710 - -0.4
Or see this region's nucleotide sequence