Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21038 and SM_b21039 are separated by 13 nucleotides SM_b21039 and SM_b21040 overlap by 4 nucleotides SM_b21040 and SM_b21041 are separated by 87 nucleotides
SM_b21038: SM_b21038 - oligopeptidemurein peptide ABC transporter permease, at 656,250 to 657,227
_b21038
SM_b21039: SM_b21039 - oligopeptidemurein peptide ABC transporter permease, at 657,241 to 658,116
_b21039
SM_b21040: SM_b21040 - oligopeptidemurein peptide ABC transporter ATP-binding protein, at 658,113 to 659,786
_b21040
SM_b21041: SM_b21041 - hypothetical protein, at 659,874 to 661,109
_b21041
Position (kb) 658
659
660 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 657.189 kb on + strand at 657.190 kb on - strand at 657.190 kb on - strand at 657.322 kb on + strand at 657.322 kb on + strand at 657.323 kb on - strand at 657.323 kb on - strand at 657.389 kb on - strand, within SM_b21039 at 657.417 kb on + strand, within SM_b21039 at 657.417 kb on + strand, within SM_b21039 at 657.436 kb on + strand, within SM_b21039 at 657.437 kb on - strand, within SM_b21039 at 657.443 kb on - strand, within SM_b21039 at 657.494 kb on - strand, within SM_b21039 at 657.690 kb on - strand, within SM_b21039 at 657.733 kb on + strand, within SM_b21039 at 657.733 kb on + strand, within SM_b21039 at 657.734 kb on - strand, within SM_b21039 at 657.734 kb on - strand, within SM_b21039 at 657.734 kb on - strand, within SM_b21039 at 657.781 kb on + strand, within SM_b21039 at 657.782 kb on - strand, within SM_b21039 at 657.875 kb on + strand, within SM_b21039 at 657.988 kb on + strand, within SM_b21039 at 657.988 kb on + strand, within SM_b21039 at 658.006 kb on + strand, within SM_b21039 at 658.724 kb on - strand, within SM_b21040 at 658.724 kb on - strand, within SM_b21040 at 658.882 kb on - strand, within SM_b21040 at 658.978 kb on + strand, within SM_b21040 at 658.979 kb on - strand, within SM_b21040 at 659.484 kb on - strand, within SM_b21040 at 659.667 kb on + strand at 659.668 kb on - strand at 659.668 kb on - strand at 659.668 kb on - strand at 659.668 kb on - strand at 659.740 kb on - strand at 659.780 kb on - strand at 659.854 kb on - strand at 659.854 kb on - strand at 660.315 kb on + strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.416 kb on + strand, within SM_b21041 at 660.416 kb on + strand, within SM_b21041 at 660.442 kb on - strand, within SM_b21041 at 660.463 kb on - strand, within SM_b21041 at 660.642 kb on + strand, within SM_b21041 at 660.780 kb on + strand, within SM_b21041
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 657,189 + -1.4 657,190 - -2.0 657,190 - +0.9 657,322 + +0.0 657,322 + +0.1 657,323 - +0.4 657,323 - -0.5 657,389 - SM_b21039 0.17 +0.1 657,417 + SM_b21039 0.20 -0.5 657,417 + SM_b21039 0.20 -0.4 657,436 + SM_b21039 0.22 -1.3 657,437 - SM_b21039 0.22 -0.7 657,443 - SM_b21039 0.23 -0.6 657,494 - SM_b21039 0.29 -0.1 657,690 - SM_b21039 0.51 +0.1 657,733 + SM_b21039 0.56 -0.7 657,733 + SM_b21039 0.56 +0.2 657,734 - SM_b21039 0.56 +0.3 657,734 - SM_b21039 0.56 -0.8 657,734 - SM_b21039 0.56 -0.1 657,781 + SM_b21039 0.62 +2.8 657,782 - SM_b21039 0.62 -0.5 657,875 + SM_b21039 0.72 +0.0 657,988 + SM_b21039 0.85 +1.2 657,988 + SM_b21039 0.85 -1.4 658,006 + SM_b21039 0.87 -0.2 658,724 - SM_b21040 0.36 +0.1 658,724 - SM_b21040 0.36 -0.1 658,882 - SM_b21040 0.46 -1.1 658,978 + SM_b21040 0.52 -2.6 658,979 - SM_b21040 0.52 +1.6 659,484 - SM_b21040 0.82 +1.0 659,667 + -3.4 659,668 - +0.4 659,668 - +0.8 659,668 - -0.8 659,668 - +0.1 659,740 - -0.3 659,780 - +3.2 659,854 - -1.7 659,854 - +4.9 660,315 + SM_b21041 0.36 +0.4 660,316 - SM_b21041 0.36 -0.6 660,316 - SM_b21041 0.36 +0.1 660,316 - SM_b21041 0.36 +1.6 660,416 + SM_b21041 0.44 -0.3 660,416 + SM_b21041 0.44 +1.2 660,442 - SM_b21041 0.46 +1.2 660,463 - SM_b21041 0.48 -0.3 660,642 + SM_b21041 0.62 +1.8 660,780 + SM_b21041 0.73 +0.4
Or see this region's nucleotide sequence