Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20870

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20869 and SM_b20870 are separated by 18 nucleotidesSM_b20870 and SM_b20871 are separated by 94 nucleotidesSM_b20871 and SM_b20872 are separated by 138 nucleotides SM_b20869: SM_b20869 - two-component response regulator protein, at 1,276,480 to 1,277,181 _b20869 SM_b20870: SM_b20870 - LysR family transcriptional regulator, at 1,277,200 to 1,278,096 _b20870 SM_b20871: SM_b20871 - short-chain dehydrogenase, at 1,278,191 to 1,278,940 _b20871 SM_b20872: SM_b20872 - transthyretin-like protein, at 1,279,079 to 1,279,468 _b20872 Position (kb) 1277 1278 1279Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1276.347 kb on - strandat 1276.488 kb on + strandat 1276.489 kb on - strandat 1276.520 kb on + strandat 1276.673 kb on + strand, within SM_b20869at 1276.673 kb on + strand, within SM_b20869at 1276.673 kb on + strand, within SM_b20869at 1276.673 kb on + strand, within SM_b20869at 1276.674 kb on - strand, within SM_b20869at 1276.674 kb on - strand, within SM_b20869at 1276.674 kb on - strand, within SM_b20869at 1276.674 kb on - strand, within SM_b20869at 1276.674 kb on - strand, within SM_b20869at 1276.890 kb on - strand, within SM_b20869at 1277.085 kb on - strand, within SM_b20869at 1277.085 kb on - strand, within SM_b20869at 1277.091 kb on + strand, within SM_b20869at 1277.092 kb on - strand, within SM_b20869at 1277.206 kb on - strandat 1277.295 kb on + strand, within SM_b20870at 1277.295 kb on + strand, within SM_b20870at 1277.295 kb on + strand, within SM_b20870at 1277.296 kb on - strand, within SM_b20870at 1277.296 kb on - strand, within SM_b20870at 1277.296 kb on - strand, within SM_b20870at 1277.385 kb on - strand, within SM_b20870at 1277.385 kb on - strand, within SM_b20870at 1277.458 kb on + strand, within SM_b20870at 1277.459 kb on - strand, within SM_b20870at 1277.497 kb on + strand, within SM_b20870at 1277.497 kb on + strand, within SM_b20870at 1277.606 kb on - strand, within SM_b20870at 1277.606 kb on - strand, within SM_b20870at 1277.628 kb on + strand, within SM_b20870at 1277.628 kb on + strand, within SM_b20870at 1277.629 kb on - strand, within SM_b20870at 1277.629 kb on - strand, within SM_b20870at 1277.631 kb on - strand, within SM_b20870at 1277.631 kb on - strand, within SM_b20870at 1277.631 kb on - strand, within SM_b20870at 1277.672 kb on + strand, within SM_b20870at 1277.672 kb on + strand, within SM_b20870at 1277.673 kb on - strand, within SM_b20870at 1277.673 kb on - strand, within SM_b20870at 1277.673 kb on - strand, within SM_b20870at 1277.721 kb on + strand, within SM_b20870at 1277.721 kb on + strand, within SM_b20870at 1277.721 kb on + strand, within SM_b20870at 1277.722 kb on - strand, within SM_b20870at 1277.773 kb on + strand, within SM_b20870at 1278.137 kb on + strandat 1278.137 kb on + strandat 1278.137 kb on + strandat 1278.137 kb on + strandat 1278.137 kb on + strandat 1278.137 kb on + strandat 1278.137 kb on + strandat 1278.160 kb on + strandat 1278.161 kb on - strandat 1278.164 kb on + strandat 1278.165 kb on - strandat 1278.185 kb on + strandat 1278.186 kb on - strandat 1278.186 kb on - strandat 1278.235 kb on + strandat 1278.440 kb on + strand, within SM_b20871at 1278.440 kb on + strand, within SM_b20871at 1278.440 kb on + strand, within SM_b20871at 1278.440 kb on + strand, within SM_b20871at 1278.440 kb on + strand, within SM_b20871at 1278.441 kb on - strand, within SM_b20871at 1278.441 kb on - strand, within SM_b20871at 1278.441 kb on - strand, within SM_b20871at 1278.441 kb on - strand, within SM_b20871at 1278.441 kb on - strand, within SM_b20871at 1278.441 kb on - strand, within SM_b20871at 1278.500 kb on + strand, within SM_b20871at 1278.500 kb on + strand, within SM_b20871at 1278.500 kb on + strand, within SM_b20871at 1278.501 kb on - strand, within SM_b20871at 1278.501 kb on - strand, within SM_b20871at 1278.592 kb on + strand, within SM_b20871at 1278.592 kb on + strand, within SM_b20871at 1278.592 kb on + strand, within SM_b20871at 1278.639 kb on - strand, within SM_b20871at 1278.715 kb on - strand, within SM_b20871at 1278.715 kb on - strand, within SM_b20871at 1278.978 kb on + strandat 1278.979 kb on - strandat 1279.003 kb on - strandat 1279.006 kb on + strandat 1279.030 kb on + strandat 1279.030 kb on + strandat 1279.030 kb on + strandat 1279.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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1,276,347 - -0.2
1,276,488 + -3.3
1,276,489 - -0.4
1,276,520 + -0.5
1,276,673 + SM_b20869 0.27 -3.1
1,276,673 + SM_b20869 0.27 +0.0
1,276,673 + SM_b20869 0.27 +0.2
1,276,673 + SM_b20869 0.27 -2.1
1,276,674 - SM_b20869 0.28 -0.9
1,276,674 - SM_b20869 0.28 -1.1
1,276,674 - SM_b20869 0.28 -2.7
1,276,674 - SM_b20869 0.28 +0.2
1,276,674 - SM_b20869 0.28 -1.2
1,276,890 - SM_b20869 0.58 +1.2
1,277,085 - SM_b20869 0.86 +0.3
1,277,085 - SM_b20869 0.86 -3.5
1,277,091 + SM_b20869 0.87 +0.3
1,277,092 - SM_b20869 0.87 -2.1
1,277,206 - -0.1
1,277,295 + SM_b20870 0.11 +2.1
1,277,295 + SM_b20870 0.11 +1.6
1,277,295 + SM_b20870 0.11 +0.5
1,277,296 - SM_b20870 0.11 +0.2
1,277,296 - SM_b20870 0.11 +3.8
1,277,296 - SM_b20870 0.11 +1.3
1,277,385 - SM_b20870 0.21 -0.2
1,277,385 - SM_b20870 0.21 -0.2
1,277,458 + SM_b20870 0.29 +2.3
1,277,459 - SM_b20870 0.29 +0.4
1,277,497 + SM_b20870 0.33 -0.5
1,277,497 + SM_b20870 0.33 -0.7
1,277,606 - SM_b20870 0.45 -2.3
1,277,606 - SM_b20870 0.45 -0.1
1,277,628 + SM_b20870 0.48 -1.1
1,277,628 + SM_b20870 0.48 +1.4
1,277,629 - SM_b20870 0.48 -0.1
1,277,629 - SM_b20870 0.48 -0.1
1,277,631 - SM_b20870 0.48 -0.3
1,277,631 - SM_b20870 0.48 -1.1
1,277,631 - SM_b20870 0.48 +0.7
1,277,672 + SM_b20870 0.53 +0.9
1,277,672 + SM_b20870 0.53 +1.3
1,277,673 - SM_b20870 0.53 -1.9
1,277,673 - SM_b20870 0.53 -0.0
1,277,673 - SM_b20870 0.53 -1.7
1,277,721 + SM_b20870 0.58 -0.5
1,277,721 + SM_b20870 0.58 +0.9
1,277,721 + SM_b20870 0.58 +0.4
1,277,722 - SM_b20870 0.58 -0.9
1,277,773 + SM_b20870 0.64 +0.3
1,278,137 + -0.1
1,278,137 + -0.1
1,278,137 + +0.7
1,278,137 + -0.2
1,278,137 + -0.3
1,278,137 + +0.4
1,278,137 + +1.3
1,278,160 + -0.8
1,278,161 - +0.5
1,278,164 + +1.4
1,278,165 - +1.3
1,278,185 + -0.1
1,278,186 - +0.8
1,278,186 - -2.2
1,278,235 + +0.6
1,278,440 + SM_b20871 0.33 -0.5
1,278,440 + SM_b20871 0.33 +0.3
1,278,440 + SM_b20871 0.33 +0.5
1,278,440 + SM_b20871 0.33 -0.3
1,278,440 + SM_b20871 0.33 +0.1
1,278,441 - SM_b20871 0.33 +2.2
1,278,441 - SM_b20871 0.33 +0.4
1,278,441 - SM_b20871 0.33 -0.0
1,278,441 - SM_b20871 0.33 -1.1
1,278,441 - SM_b20871 0.33 -2.3
1,278,441 - SM_b20871 0.33 -2.4
1,278,500 + SM_b20871 0.41 -2.3
1,278,500 + SM_b20871 0.41 +0.9
1,278,500 + SM_b20871 0.41 -1.1
1,278,501 - SM_b20871 0.41 -0.5
1,278,501 - SM_b20871 0.41 -1.6
1,278,592 + SM_b20871 0.53 +0.3
1,278,592 + SM_b20871 0.53 -0.2
1,278,592 + SM_b20871 0.53 -0.0
1,278,639 - SM_b20871 0.60 +0.3
1,278,715 - SM_b20871 0.70 -0.4
1,278,715 - SM_b20871 0.70 +0.3
1,278,978 + +0.7
1,278,979 - +0.2
1,279,003 - -0.6
1,279,006 + -0.6
1,279,030 + -1.1
1,279,030 + -0.0
1,279,030 + -1.3
1,279,031 - +0.9

Or see this region's nucleotide sequence