Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20868 and SM_b20869 are separated by 473 nucleotides SM_b20869 and SM_b20870 are separated by 18 nucleotides
SM_b20868: SM_b20868 - two-component sensor histidine kinase, at 1,272,317 to 1,276,006
_b20868
SM_b20869: SM_b20869 - two-component response regulator protein, at 1,276,480 to 1,277,181
_b20869
SM_b20870: SM_b20870 - LysR family transcriptional regulator, at 1,277,200 to 1,278,096
_b20870
Position (kb)
1276
1277
1278 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1275.548 kb on - strand, within SM_b20868 at 1275.575 kb on - strand, within SM_b20868 at 1275.589 kb on + strand, within SM_b20868 at 1275.590 kb on - strand, within SM_b20868 at 1275.590 kb on - strand, within SM_b20868 at 1275.802 kb on - strand at 1275.931 kb on - strand at 1275.987 kb on + strand at 1276.015 kb on + strand at 1276.016 kb on - strand at 1276.078 kb on - strand at 1276.078 kb on - strand at 1276.190 kb on + strand at 1276.347 kb on - strand at 1276.488 kb on + strand at 1276.489 kb on - strand at 1276.520 kb on + strand at 1276.673 kb on + strand, within SM_b20869 at 1276.673 kb on + strand, within SM_b20869 at 1276.673 kb on + strand, within SM_b20869 at 1276.673 kb on + strand, within SM_b20869 at 1276.674 kb on - strand, within SM_b20869 at 1276.674 kb on - strand, within SM_b20869 at 1276.674 kb on - strand, within SM_b20869 at 1276.674 kb on - strand, within SM_b20869 at 1276.674 kb on - strand, within SM_b20869 at 1276.890 kb on - strand, within SM_b20869 at 1277.085 kb on - strand, within SM_b20869 at 1277.085 kb on - strand, within SM_b20869 at 1277.091 kb on + strand, within SM_b20869 at 1277.092 kb on - strand, within SM_b20869 at 1277.206 kb on - strand at 1277.295 kb on + strand, within SM_b20870 at 1277.295 kb on + strand, within SM_b20870 at 1277.295 kb on + strand, within SM_b20870 at 1277.296 kb on - strand, within SM_b20870 at 1277.296 kb on - strand, within SM_b20870 at 1277.296 kb on - strand, within SM_b20870 at 1277.385 kb on - strand, within SM_b20870 at 1277.385 kb on - strand, within SM_b20870 at 1277.458 kb on + strand, within SM_b20870 at 1277.459 kb on - strand, within SM_b20870 at 1277.497 kb on + strand, within SM_b20870 at 1277.497 kb on + strand, within SM_b20870 at 1277.606 kb on - strand, within SM_b20870 at 1277.606 kb on - strand, within SM_b20870 at 1277.628 kb on + strand, within SM_b20870 at 1277.628 kb on + strand, within SM_b20870 at 1277.629 kb on - strand, within SM_b20870 at 1277.629 kb on - strand, within SM_b20870 at 1277.631 kb on - strand, within SM_b20870 at 1277.631 kb on - strand, within SM_b20870 at 1277.631 kb on - strand, within SM_b20870 at 1277.672 kb on + strand, within SM_b20870 at 1277.672 kb on + strand, within SM_b20870 at 1277.673 kb on - strand, within SM_b20870 at 1277.673 kb on - strand, within SM_b20870 at 1277.673 kb on - strand, within SM_b20870 at 1277.721 kb on + strand, within SM_b20870 at 1277.721 kb on + strand, within SM_b20870 at 1277.721 kb on + strand, within SM_b20870 at 1277.722 kb on - strand, within SM_b20870 at 1277.773 kb on + strand, within SM_b20870 at 1278.137 kb on + strand at 1278.137 kb on + strand at 1278.137 kb on + strand at 1278.137 kb on + strand at 1278.137 kb on + strand at 1278.137 kb on + strand at 1278.137 kb on + strand at 1278.160 kb on + strand at 1278.161 kb on - strand at 1278.164 kb on + strand at 1278.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 1,275,548 - SM_b20868 0.88 -0.7 1,275,575 - SM_b20868 0.88 +0.4 1,275,589 + SM_b20868 0.89 +1.0 1,275,590 - SM_b20868 0.89 +1.1 1,275,590 - SM_b20868 0.89 +0.9 1,275,802 - +0.2 1,275,931 - +0.0 1,275,987 + -0.4 1,276,015 + +0.9 1,276,016 - +0.7 1,276,078 - +0.8 1,276,078 - +3.0 1,276,190 + +1.0 1,276,347 - -0.2 1,276,488 + -3.3 1,276,489 - -0.4 1,276,520 + -0.5 1,276,673 + SM_b20869 0.27 -3.1 1,276,673 + SM_b20869 0.27 +0.0 1,276,673 + SM_b20869 0.27 +0.2 1,276,673 + SM_b20869 0.27 -2.1 1,276,674 - SM_b20869 0.28 -0.9 1,276,674 - SM_b20869 0.28 -1.1 1,276,674 - SM_b20869 0.28 -2.7 1,276,674 - SM_b20869 0.28 +0.2 1,276,674 - SM_b20869 0.28 -1.2 1,276,890 - SM_b20869 0.58 +1.2 1,277,085 - SM_b20869 0.86 +0.3 1,277,085 - SM_b20869 0.86 -3.5 1,277,091 + SM_b20869 0.87 +0.3 1,277,092 - SM_b20869 0.87 -2.1 1,277,206 - -0.1 1,277,295 + SM_b20870 0.11 +2.1 1,277,295 + SM_b20870 0.11 +1.6 1,277,295 + SM_b20870 0.11 +0.5 1,277,296 - SM_b20870 0.11 +0.2 1,277,296 - SM_b20870 0.11 +3.8 1,277,296 - SM_b20870 0.11 +1.3 1,277,385 - SM_b20870 0.21 -0.2 1,277,385 - SM_b20870 0.21 -0.2 1,277,458 + SM_b20870 0.29 +2.3 1,277,459 - SM_b20870 0.29 +0.4 1,277,497 + SM_b20870 0.33 -0.5 1,277,497 + SM_b20870 0.33 -0.7 1,277,606 - SM_b20870 0.45 -2.3 1,277,606 - SM_b20870 0.45 -0.1 1,277,628 + SM_b20870 0.48 -1.1 1,277,628 + SM_b20870 0.48 +1.4 1,277,629 - SM_b20870 0.48 -0.1 1,277,629 - SM_b20870 0.48 -0.1 1,277,631 - SM_b20870 0.48 -0.3 1,277,631 - SM_b20870 0.48 -1.1 1,277,631 - SM_b20870 0.48 +0.7 1,277,672 + SM_b20870 0.53 +0.9 1,277,672 + SM_b20870 0.53 +1.3 1,277,673 - SM_b20870 0.53 -1.9 1,277,673 - SM_b20870 0.53 -0.0 1,277,673 - SM_b20870 0.53 -1.7 1,277,721 + SM_b20870 0.58 -0.5 1,277,721 + SM_b20870 0.58 +0.9 1,277,721 + SM_b20870 0.58 +0.4 1,277,722 - SM_b20870 0.58 -0.9 1,277,773 + SM_b20870 0.64 +0.3 1,278,137 + -0.1 1,278,137 + -0.1 1,278,137 + +0.7 1,278,137 + -0.2 1,278,137 + -0.3 1,278,137 + +0.4 1,278,137 + +1.3 1,278,160 + -0.8 1,278,161 - +0.5 1,278,164 + +1.4 1,278,165 - +1.3
Or see this region's nucleotide sequence