Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20812 and SM_b20813 are separated by 630 nucleotides SM_b20813 and SM_b20814 are separated by 337 nucleotides
SM_b20812: SM_b20812 - hypothetical protein, at 598,175 to 599,221
_b20812
SM_b20813: SM_b20813 - lipid ABC transporter permease/ATP-binding protein, at 599,852 to 601,657
_b20813
SM_b20814: SM_b20814 - hypothetical protein, at 601,995 to 602,735
_b20814
Position (kb) 599
600
601
602 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 598.856 kb on + strand, within SM_b20812 at 598.857 kb on - strand, within SM_b20812 at 598.857 kb on - strand, within SM_b20812 at 598.915 kb on + strand, within SM_b20812 at 598.915 kb on + strand, within SM_b20812 at 598.915 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.965 kb on - strand, within SM_b20812 at 598.965 kb on - strand, within SM_b20812 at 598.965 kb on - strand, within SM_b20812 at 598.965 kb on - strand, within SM_b20812 at 598.966 kb on + strand, within SM_b20812 at 598.966 kb on + strand, within SM_b20812 at 598.966 kb on + strand, within SM_b20812 at 598.967 kb on - strand, within SM_b20812 at 598.990 kb on - strand, within SM_b20812 at 599.120 kb on + strand at 599.120 kb on + strand at 599.268 kb on + strand at 599.269 kb on - strand at 599.303 kb on + strand at 599.303 kb on + strand at 599.303 kb on + strand at 599.303 kb on + strand at 599.303 kb on + strand at 599.304 kb on - strand at 599.304 kb on - strand at 599.304 kb on - strand at 599.305 kb on + strand at 599.305 kb on + strand at 599.305 kb on + strand at 599.306 kb on - strand at 599.306 kb on - strand at 599.306 kb on - strand at 599.306 kb on - strand at 599.306 kb on - strand at 599.404 kb on + strand at 599.405 kb on - strand at 599.405 kb on - strand at 599.477 kb on + strand at 599.489 kb on + strand at 599.545 kb on + strand at 599.545 kb on + strand at 599.546 kb on - strand at 599.546 kb on - strand at 599.719 kb on - strand at 599.719 kb on - strand at 599.719 kb on - strand at 599.788 kb on + strand at 599.788 kb on + strand at 599.790 kb on + strand at 599.790 kb on + strand at 599.791 kb on - strand at 599.791 kb on - strand at 599.791 kb on - strand at 599.791 kb on - strand at 599.791 kb on - strand at 599.850 kb on - strand at 599.850 kb on - strand at 599.887 kb on + strand at 599.910 kb on + strand at 600.087 kb on + strand, within SM_b20813 at 600.122 kb on + strand, within SM_b20813 at 600.122 kb on + strand, within SM_b20813 at 600.123 kb on - strand, within SM_b20813 at 600.123 kb on - strand, within SM_b20813 at 600.160 kb on + strand, within SM_b20813 at 600.160 kb on + strand, within SM_b20813 at 600.173 kb on + strand, within SM_b20813 at 600.174 kb on - strand, within SM_b20813 at 600.174 kb on - strand, within SM_b20813 at 600.175 kb on + strand, within SM_b20813 at 600.175 kb on + strand, within SM_b20813 at 600.175 kb on + strand, within SM_b20813 at 600.175 kb on + strand, within SM_b20813 at 600.175 kb on + strand, within SM_b20813 at 600.189 kb on - strand, within SM_b20813 at 600.357 kb on + strand, within SM_b20813 at 600.358 kb on - strand, within SM_b20813 at 600.358 kb on - strand, within SM_b20813 at 600.358 kb on - strand, within SM_b20813 at 600.425 kb on + strand, within SM_b20813 at 600.486 kb on + strand, within SM_b20813 at 600.680 kb on + strand, within SM_b20813 at 600.681 kb on - strand, within SM_b20813 at 600.681 kb on - strand, within SM_b20813 at 600.681 kb on - strand, within SM_b20813 at 600.701 kb on + strand, within SM_b20813 at 600.702 kb on - strand, within SM_b20813 at 600.702 kb on - strand, within SM_b20813 at 600.702 kb on - strand, within SM_b20813 at 600.702 kb on - strand, within SM_b20813 at 600.738 kb on + strand, within SM_b20813 at 600.758 kb on + strand, within SM_b20813 at 600.758 kb on + strand, within SM_b20813 at 600.758 kb on + strand, within SM_b20813 at 600.778 kb on - strand, within SM_b20813 at 600.933 kb on - strand, within SM_b20813 at 601.055 kb on + strand, within SM_b20813 at 601.098 kb on + strand, within SM_b20813 at 601.098 kb on + strand, within SM_b20813 at 601.099 kb on - strand, within SM_b20813 at 601.108 kb on + strand, within SM_b20813 at 601.109 kb on - strand, within SM_b20813 at 601.139 kb on + strand, within SM_b20813 at 601.139 kb on + strand, within SM_b20813 at 601.157 kb on + strand, within SM_b20813 at 601.157 kb on + strand, within SM_b20813 at 601.158 kb on - strand, within SM_b20813 at 601.158 kb on - strand, within SM_b20813 at 601.193 kb on + strand, within SM_b20813 at 601.264 kb on - strand, within SM_b20813 at 601.288 kb on + strand, within SM_b20813 at 601.288 kb on + strand at 601.289 kb on - strand, within SM_b20813 at 601.289 kb on - strand, within SM_b20813 at 601.375 kb on + strand, within SM_b20813 at 601.396 kb on + strand, within SM_b20813 at 601.504 kb on + strand at 601.592 kb on + strand at 601.593 kb on - strand at 601.639 kb on - strand at 601.639 kb on - strand at 601.655 kb on + strand at 601.655 kb on + strand at 601.655 kb on + strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.756 kb on + strand at 601.763 kb on + strand at 601.839 kb on + strand at 601.840 kb on - strand at 601.898 kb on + strand at 601.898 kb on + strand at 601.898 kb on + strand at 601.899 kb on - strand at 601.899 kb on - strand at 602.000 kb on + strand at 602.000 kb on + strand at 602.001 kb on - strand at 602.001 kb on - strand at 602.002 kb on + strand at 602.002 kb on + strand at 602.002 kb on + strand at 602.016 kb on - strand at 602.165 kb on + strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.189 kb on + strand, within SM_b20814 at 602.332 kb on - strand, within SM_b20814 at 602.471 kb on + strand, within SM_b20814 at 602.471 kb on + strand, within SM_b20814 at 602.496 kb on + strand, within SM_b20814 at 602.560 kb on + strand, within SM_b20814 at 602.560 kb on + strand, within SM_b20814 at 602.561 kb on - strand, within SM_b20814 at 602.569 kb on + strand, within SM_b20814 at 602.569 kb on + strand, within SM_b20814 at 602.570 kb on - strand, within SM_b20814 at 602.652 kb on + strand, within SM_b20814 at 602.656 kb on - strand, within SM_b20814 at 602.656 kb on - strand, within SM_b20814
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 598,856 + SM_b20812 0.65 -0.5 598,857 - SM_b20812 0.65 +0.0 598,857 - SM_b20812 0.65 -0.5 598,915 + SM_b20812 0.71 -0.5 598,915 + SM_b20812 0.71 +0.7 598,915 + SM_b20812 0.71 -0.6 598,964 + SM_b20812 0.75 +0.1 598,964 + SM_b20812 0.75 +0.7 598,964 + SM_b20812 0.75 -0.1 598,964 + SM_b20812 0.75 -1.8 598,964 + SM_b20812 0.75 -1.5 598,964 + SM_b20812 0.75 +1.3 598,964 + SM_b20812 0.75 -1.7 598,965 - SM_b20812 0.75 +1.2 598,965 - SM_b20812 0.75 -0.6 598,965 - SM_b20812 0.75 +0.4 598,965 - SM_b20812 0.75 +1.7 598,966 + SM_b20812 0.76 -1.2 598,966 + SM_b20812 0.76 -0.5 598,966 + SM_b20812 0.76 -2.2 598,967 - SM_b20812 0.76 -0.1 598,990 - SM_b20812 0.78 -0.2 599,120 + +1.0 599,120 + +0.5 599,268 + -0.9 599,269 - -0.5 599,303 + -0.2 599,303 + +0.2 599,303 + -0.2 599,303 + -1.2 599,303 + -2.1 599,304 - +0.9 599,304 - +0.6 599,304 - +0.7 599,305 + +1.3 599,305 + -2.6 599,305 + +1.8 599,306 - -1.6 599,306 - +0.9 599,306 - +1.1 599,306 - +1.4 599,306 - -0.1 599,404 + +0.9 599,405 - +1.6 599,405 - -1.4 599,477 + +0.3 599,489 + -1.1 599,545 + +0.8 599,545 + -3.0 599,546 - +0.8 599,546 - -0.2 599,719 - -1.1 599,719 - -0.2 599,719 - +0.7 599,788 + -3.2 599,788 + +0.1 599,790 + -1.8 599,790 + -1.9 599,791 - -1.7 599,791 - +0.8 599,791 - +0.5 599,791 - -1.6 599,791 - -1.8 599,850 - +0.9 599,850 - -0.4 599,887 + -0.4 599,910 + -0.3 600,087 + SM_b20813 0.13 -1.4 600,122 + SM_b20813 0.15 -1.0 600,122 + SM_b20813 0.15 -0.1 600,123 - SM_b20813 0.15 +1.8 600,123 - SM_b20813 0.15 +2.6 600,160 + SM_b20813 0.17 +0.4 600,160 + SM_b20813 0.17 +0.2 600,173 + SM_b20813 0.18 -2.3 600,174 - SM_b20813 0.18 -0.4 600,174 - SM_b20813 0.18 -0.5 600,175 + SM_b20813 0.18 -0.7 600,175 + SM_b20813 0.18 +0.4 600,175 + SM_b20813 0.18 -0.6 600,175 + SM_b20813 0.18 +0.4 600,175 + SM_b20813 0.18 -2.0 600,189 - SM_b20813 0.19 -0.2 600,357 + SM_b20813 0.28 -3.4 600,358 - SM_b20813 0.28 -1.5 600,358 - SM_b20813 0.28 -1.2 600,358 - SM_b20813 0.28 +0.8 600,425 + SM_b20813 0.32 +1.4 600,486 + SM_b20813 0.35 +0.2 600,680 + SM_b20813 0.46 +0.5 600,681 - SM_b20813 0.46 -3.0 600,681 - SM_b20813 0.46 -0.1 600,681 - SM_b20813 0.46 -1.4 600,701 + SM_b20813 0.47 +0.4 600,702 - SM_b20813 0.47 -0.4 600,702 - SM_b20813 0.47 +0.1 600,702 - SM_b20813 0.47 -3.0 600,702 - SM_b20813 0.47 +1.4 600,738 + SM_b20813 0.49 -0.9 600,758 + SM_b20813 0.50 -0.6 600,758 + SM_b20813 0.50 -0.4 600,758 + SM_b20813 0.50 -1.4 600,778 - SM_b20813 0.51 -2.2 600,933 - SM_b20813 0.60 -2.0 601,055 + SM_b20813 0.67 +0.0 601,098 + SM_b20813 0.69 -0.6 601,098 + SM_b20813 0.69 -1.0 601,099 - SM_b20813 0.69 +0.0 601,108 + SM_b20813 0.70 -0.6 601,109 - SM_b20813 0.70 -2.2 601,139 + SM_b20813 0.71 +4.2 601,139 + SM_b20813 0.71 -4.1 601,157 + SM_b20813 0.72 +0.1 601,157 + SM_b20813 0.72 -0.7 601,158 - SM_b20813 0.72 +0.2 601,158 - SM_b20813 0.72 +0.5 601,193 + SM_b20813 0.74 +0.6 601,264 - SM_b20813 0.78 +1.6 601,288 + SM_b20813 0.80 -2.3 601,288 + +0.2 601,289 - SM_b20813 0.80 -0.2 601,289 - SM_b20813 0.80 -3.7 601,375 + SM_b20813 0.84 -0.1 601,396 + SM_b20813 0.85 -1.6 601,504 + -0.1 601,592 + +0.0 601,593 - -0.0 601,639 - +0.6 601,639 - +0.4 601,655 + -0.4 601,655 + -0.0 601,655 + -0.8 601,656 - -1.6 601,656 - +1.8 601,656 - -2.0 601,656 - +1.2 601,656 - -0.6 601,656 - +1.2 601,756 + -0.8 601,763 + +0.7 601,839 + -0.4 601,840 - -0.9 601,898 + +0.0 601,898 + +0.6 601,898 + -0.5 601,899 - +0.3 601,899 - +0.5 602,000 + +0.6 602,000 + -2.0 602,001 - -0.3 602,001 - -2.1 602,002 + +0.9 602,002 + -0.6 602,002 + -0.4 602,016 - +1.9 602,165 + SM_b20814 0.23 -0.3 602,166 - SM_b20814 0.23 +0.2 602,166 - SM_b20814 0.23 +0.6 602,166 - SM_b20814 0.23 -0.0 602,166 - SM_b20814 0.23 +0.1 602,166 - SM_b20814 0.23 +2.5 602,189 + SM_b20814 0.26 -0.7 602,332 - SM_b20814 0.45 +0.5 602,471 + SM_b20814 0.64 +1.9 602,471 + SM_b20814 0.64 +0.2 602,496 + SM_b20814 0.68 -0.7 602,560 + SM_b20814 0.76 -0.2 602,560 + SM_b20814 0.76 -1.0 602,561 - SM_b20814 0.76 +0.8 602,569 + SM_b20814 0.77 +0.2 602,569 + SM_b20814 0.77 -0.4 602,570 - SM_b20814 0.78 -0.2 602,652 + SM_b20814 0.89 -0.6 602,656 - SM_b20814 0.89 -2.0 602,656 - SM_b20814 0.89 +1.7
Or see this region's nucleotide sequence