Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20657

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20656 and SM_b20657 are separated by 38 nucleotidesSM_b20657 and SM_b20658 are separated by 7 nucleotidesSM_b20658 and SM_b20659 are separated by 14 nucleotides SM_b20656: SM_b20656 - oxidoreductase, at 1,457,321 to 1,458,190 _b20656 SM_b20657: SM_b20657 - hypothetical protein, at 1,458,229 to 1,458,885 _b20657 SM_b20658: SM_b20658 - sugar uptake ABC transporter permease, at 1,458,893 to 1,459,792 _b20658 SM_b20659: SM_b20659 - sugar uptake ABC transporter permease, at 1,459,807 to 1,460,739 _b20659 Position (kb) 1458 1459Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1457.320 kb on + strandat 1457.320 kb on + strandat 1457.321 kb on - strandat 1457.321 kb on - strandat 1457.457 kb on + strand, within SM_b20656at 1457.667 kb on - strand, within SM_b20656at 1457.667 kb on - strand, within SM_b20656at 1457.771 kb on + strand, within SM_b20656at 1457.772 kb on - strand, within SM_b20656at 1457.861 kb on + strand, within SM_b20656at 1457.862 kb on - strand, within SM_b20656at 1457.862 kb on - strand, within SM_b20656at 1457.862 kb on - strand, within SM_b20656at 1457.867 kb on - strand, within SM_b20656at 1457.867 kb on - strand, within SM_b20656at 1458.105 kb on + strandat 1458.173 kb on + strandat 1458.174 kb on - strandat 1458.247 kb on + strandat 1458.466 kb on + strand, within SM_b20657at 1458.477 kb on + strand, within SM_b20657at 1458.477 kb on + strand, within SM_b20657at 1458.478 kb on - strand, within SM_b20657at 1458.927 kb on + strandat 1458.927 kb on + strandat 1458.928 kb on - strandat 1458.928 kb on - strandat 1458.928 kb on - strandat 1458.928 kb on - strandat 1458.930 kb on + strandat 1458.931 kb on - strandat 1458.931 kb on - strandat 1458.948 kb on + strandat 1458.949 kb on - strandat 1458.949 kb on - strandat 1459.089 kb on + strand, within SM_b20658at 1459.245 kb on + strand, within SM_b20658at 1459.246 kb on - strand, within SM_b20658at 1459.275 kb on - strand, within SM_b20658at 1459.291 kb on - strand, within SM_b20658at 1459.320 kb on + strand, within SM_b20658at 1459.383 kb on + strand, within SM_b20658at 1459.446 kb on + strand, within SM_b20658at 1459.447 kb on - strand, within SM_b20658at 1459.447 kb on - strand, within SM_b20658at 1459.447 kb on - strand, within SM_b20658at 1459.490 kb on + strand, within SM_b20658at 1459.527 kb on + strand, within SM_b20658at 1459.528 kb on - strand, within SM_b20658at 1459.548 kb on + strand, within SM_b20658at 1459.548 kb on + strand, within SM_b20658at 1459.548 kb on + strand, within SM_b20658at 1459.592 kb on - strand, within SM_b20658at 1459.593 kb on + strand, within SM_b20658at 1459.593 kb on + strand, within SM_b20658at 1459.594 kb on - strand, within SM_b20658at 1459.594 kb on - strand, within SM_b20658at 1459.594 kb on - strand, within SM_b20658at 1459.603 kb on - strand, within SM_b20658at 1459.650 kb on + strand, within SM_b20658at 1459.667 kb on + strand, within SM_b20658at 1459.668 kb on - strand, within SM_b20658at 1459.668 kb on - strand, within SM_b20658at 1459.695 kb on + strand, within SM_b20658at 1459.696 kb on - strand, within SM_b20658at 1459.696 kb on - strand, within SM_b20658at 1459.696 kb on - strand, within SM_b20658at 1459.731 kb on + strandat 1459.732 kb on - strandat 1459.732 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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1,457,320 + -0.0
1,457,320 + -0.4
1,457,321 - +1.0
1,457,321 - -0.3
1,457,457 + SM_b20656 0.16 -1.2
1,457,667 - SM_b20656 0.40 +0.4
1,457,667 - SM_b20656 0.40 -1.7
1,457,771 + SM_b20656 0.52 -1.6
1,457,772 - SM_b20656 0.52 -1.7
1,457,861 + SM_b20656 0.62 +1.3
1,457,862 - SM_b20656 0.62 -0.5
1,457,862 - SM_b20656 0.62 -0.3
1,457,862 - SM_b20656 0.62 -0.2
1,457,867 - SM_b20656 0.63 +0.0
1,457,867 - SM_b20656 0.63 +0.1
1,458,105 + -3.1
1,458,173 + -1.2
1,458,174 - +0.3
1,458,247 + -2.5
1,458,466 + SM_b20657 0.36 -0.3
1,458,477 + SM_b20657 0.38 +1.0
1,458,477 + SM_b20657 0.38 +0.6
1,458,478 - SM_b20657 0.38 +0.3
1,458,927 + -2.7
1,458,927 + +0.6
1,458,928 - -0.3
1,458,928 - -0.4
1,458,928 - -0.5
1,458,928 - -0.5
1,458,930 + -0.7
1,458,931 - +0.3
1,458,931 - +0.3
1,458,948 + +0.9
1,458,949 - +0.7
1,458,949 - -0.6
1,459,089 + SM_b20658 0.22 +1.1
1,459,245 + SM_b20658 0.39 -1.9
1,459,246 - SM_b20658 0.39 +0.2
1,459,275 - SM_b20658 0.42 -0.3
1,459,291 - SM_b20658 0.44 +0.9
1,459,320 + SM_b20658 0.47 -4.1
1,459,383 + SM_b20658 0.54 +0.1
1,459,446 + SM_b20658 0.61 -3.1
1,459,447 - SM_b20658 0.62 -0.2
1,459,447 - SM_b20658 0.62 +1.2
1,459,447 - SM_b20658 0.62 +1.3
1,459,490 + SM_b20658 0.66 -1.1
1,459,527 + SM_b20658 0.70 +0.1
1,459,528 - SM_b20658 0.71 +0.4
1,459,548 + SM_b20658 0.73 +0.8
1,459,548 + SM_b20658 0.73 -0.3
1,459,548 + SM_b20658 0.73 +1.0
1,459,592 - SM_b20658 0.78 +0.3
1,459,593 + SM_b20658 0.78 -0.2
1,459,593 + SM_b20658 0.78 -0.9
1,459,594 - SM_b20658 0.78 +0.6
1,459,594 - SM_b20658 0.78 +0.4
1,459,594 - SM_b20658 0.78 -0.3
1,459,603 - SM_b20658 0.79 -0.2
1,459,650 + SM_b20658 0.84 -0.0
1,459,667 + SM_b20658 0.86 +0.2
1,459,668 - SM_b20658 0.86 -0.4
1,459,668 - SM_b20658 0.86 +0.1
1,459,695 + SM_b20658 0.89 -0.4
1,459,696 - SM_b20658 0.89 -0.3
1,459,696 - SM_b20658 0.89 -2.4
1,459,696 - SM_b20658 0.89 -0.4
1,459,731 + -0.6
1,459,732 - -1.0
1,459,732 - -0.2

Or see this region's nucleotide sequence