Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20449

Experiment: nitrate 40 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20447 and SM_b20448 are separated by 75 nucleotidesSM_b20448 and SM_b20449 are separated by 116 nucleotidesSM_b20449 and SM_b20450 overlap by 4 nucleotides SM_b20447: SM_b20447 - hypothetical protein, at 458,865 to 460,559 _b20447 SM_b20448: SM_b20448 - hypothetical protein, at 460,635 to 461,153 _b20448 SM_b20449: SM_b20449 - methyltransferase, at 461,270 to 462,328 _b20449 SM_b20450: SM_b20450 - regulatory protein, at 462,325 to 464,685 _b20450 Position (kb) 461 462 463Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 460.305 kb on + strand, within SM_b20447at 460.306 kb on - strand, within SM_b20447at 460.591 kb on - strandat 460.766 kb on - strand, within SM_b20448at 460.787 kb on + strand, within SM_b20448at 460.787 kb on + strand, within SM_b20448at 460.831 kb on + strandat 460.832 kb on - strand, within SM_b20448at 460.953 kb on - strand, within SM_b20448at 460.998 kb on + strand, within SM_b20448at 461.155 kb on + strandat 461.156 kb on - strandat 461.265 kb on + strandat 461.266 kb on - strandat 461.275 kb on + strandat 461.276 kb on - strandat 461.276 kb on - strandat 461.276 kb on - strandat 461.309 kb on + strandat 461.309 kb on + strandat 461.309 kb on + strandat 461.310 kb on - strandat 461.310 kb on - strandat 461.310 kb on - strandat 461.351 kb on + strandat 461.351 kb on + strandat 461.352 kb on - strandat 461.498 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.792 kb on + strand, within SM_b20449at 461.792 kb on + strand, within SM_b20449at 461.792 kb on + strand, within SM_b20449at 461.793 kb on - strand, within SM_b20449at 461.793 kb on - strand, within SM_b20449at 461.793 kb on - strand, within SM_b20449at 461.931 kb on - strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.934 kb on + strand, within SM_b20449at 461.934 kb on + strand, within SM_b20449at 461.935 kb on - strand, within SM_b20449at 461.996 kb on + strand, within SM_b20449at 461.997 kb on - strand, within SM_b20449at 461.997 kb on - strand, within SM_b20449at 462.176 kb on + strand, within SM_b20449at 462.177 kb on - strand, within SM_b20449at 462.195 kb on + strand, within SM_b20449at 462.282 kb on - strandat 462.518 kb on - strandat 462.518 kb on - strandat 462.518 kb on - strandat 462.519 kb on + strandat 462.530 kb on - strandat 462.530 kb on - strandat 462.880 kb on + strand, within SM_b20450at 462.880 kb on + strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.883 kb on + strand, within SM_b20450at 462.883 kb on + strand, within SM_b20450at 462.883 kb on + strand, within SM_b20450at 462.883 kb on + strand, within SM_b20450at 462.885 kb on + strand, within SM_b20450at 462.886 kb on - strand, within SM_b20450at 462.926 kb on - strand, within SM_b20450at 462.926 kb on - strand, within SM_b20450at 462.928 kb on - strand, within SM_b20450at 463.009 kb on + strand, within SM_b20450at 463.085 kb on - strand, within SM_b20450at 463.085 kb on - strand, within SM_b20450at 463.085 kb on - strand, within SM_b20450at 463.086 kb on + strand, within SM_b20450at 463.218 kb on + strand, within SM_b20450

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
remove
460,305 + SM_b20447 0.85 -0.1
460,306 - SM_b20447 0.85 +0.9
460,591 - -2.4
460,766 - SM_b20448 0.25 +1.3
460,787 + SM_b20448 0.29 -0.7
460,787 + SM_b20448 0.29 +0.5
460,831 + -1.3
460,832 - SM_b20448 0.38 +0.3
460,953 - SM_b20448 0.61 +0.6
460,998 + SM_b20448 0.70 +1.1
461,155 + -0.4
461,156 - +0.3
461,265 + +0.0
461,266 - +0.2
461,275 + -1.9
461,276 - -0.6
461,276 - -1.4
461,276 - -1.7
461,309 + +0.3
461,309 + -0.2
461,309 + +0.1
461,310 - +0.0
461,310 - -2.3
461,310 - -0.3
461,351 + -0.4
461,351 + +1.2
461,352 - -1.5
461,498 + SM_b20449 0.22 +0.8
461,646 + SM_b20449 0.36 -3.9
461,646 + SM_b20449 0.36 -0.7
461,646 + SM_b20449 0.36 -0.2
461,646 + SM_b20449 0.36 +0.0
461,646 + SM_b20449 0.36 -0.0
461,646 + SM_b20449 0.36 +0.3
461,646 + SM_b20449 0.36 -0.4
461,646 + SM_b20449 0.36 -0.3
461,646 + SM_b20449 0.36 +0.6
461,646 + SM_b20449 0.36 -1.3
461,646 + SM_b20449 0.36 -0.4
461,646 + SM_b20449 0.36 -0.4
461,647 - SM_b20449 0.36 -0.7
461,647 - SM_b20449 0.36 -1.3
461,647 - SM_b20449 0.36 -0.7
461,647 - SM_b20449 0.36 -0.7
461,647 - SM_b20449 0.36 -3.8
461,647 - SM_b20449 0.36 +1.8
461,647 - SM_b20449 0.36 -0.7
461,786 + SM_b20449 0.49 -2.2
461,786 + SM_b20449 0.49 +0.6
461,786 + SM_b20449 0.49 -0.5
461,786 + SM_b20449 0.49 -0.2
461,786 + SM_b20449 0.49 -0.5
461,788 + SM_b20449 0.49 -0.9
461,788 + SM_b20449 0.49 -0.4
461,788 + SM_b20449 0.49 +0.6
461,788 + SM_b20449 0.49 +0.6
461,788 + SM_b20449 0.49 +0.4
461,789 - SM_b20449 0.49 -0.5
461,789 - SM_b20449 0.49 -1.7
461,789 - SM_b20449 0.49 -3.8
461,789 - SM_b20449 0.49 -1.7
461,792 + SM_b20449 0.49 -0.2
461,792 + SM_b20449 0.49 -2.7
461,792 + SM_b20449 0.49 -0.2
461,793 - SM_b20449 0.49 -1.1
461,793 - SM_b20449 0.49 -0.5
461,793 - SM_b20449 0.49 -2.9
461,931 - SM_b20449 0.62 +0.2
461,932 + SM_b20449 0.63 -3.1
461,932 + SM_b20449 0.63 +1.0
461,932 + SM_b20449 0.63 -0.4
461,932 + SM_b20449 0.63 -0.1
461,932 + SM_b20449 0.63 +2.7
461,933 - SM_b20449 0.63 -0.8
461,933 - SM_b20449 0.63 -1.2
461,933 - SM_b20449 0.63 -2.5
461,933 - SM_b20449 0.63 -1.3
461,934 + SM_b20449 0.63 -0.5
461,934 + SM_b20449 0.63 -1.3
461,935 - SM_b20449 0.63 -1.3
461,996 + SM_b20449 0.69 +0.5
461,997 - SM_b20449 0.69 -3.1
461,997 - SM_b20449 0.69 -2.1
462,176 + SM_b20449 0.86 -3.8
462,177 - SM_b20449 0.86 -1.1
462,195 + SM_b20449 0.87 +0.5
462,282 - +0.6
462,518 - -0.6
462,518 - +0.7
462,518 - +0.1
462,519 + -3.1
462,530 - +0.1
462,530 - -0.1
462,880 + SM_b20450 0.24 -1.9
462,880 + SM_b20450 0.24 -0.9
462,881 - SM_b20450 0.24 -1.5
462,881 - SM_b20450 0.24 -0.3
462,881 - SM_b20450 0.24 -0.6
462,881 - SM_b20450 0.24 -0.5
462,881 - SM_b20450 0.24 -2.1
462,883 + SM_b20450 0.24 -0.7
462,883 + SM_b20450 0.24 +1.1
462,883 + SM_b20450 0.24 -0.4
462,883 + SM_b20450 0.24 +1.0
462,885 + SM_b20450 0.24 -1.0
462,886 - SM_b20450 0.24 +2.6
462,926 - SM_b20450 0.25 -0.9
462,926 - SM_b20450 0.25 -1.0
462,928 - SM_b20450 0.26 -3.3
463,009 + SM_b20450 0.29 +0.3
463,085 - SM_b20450 0.32 -0.4
463,085 - SM_b20450 0.32 -1.7
463,085 - SM_b20450 0.32 -1.6
463,086 + SM_b20450 0.32 -1.1
463,218 + SM_b20450 0.38 -1.5

Or see this region's nucleotide sequence