Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20448

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20447 and SM_b20448 are separated by 75 nucleotidesSM_b20448 and SM_b20449 are separated by 116 nucleotides SM_b20447: SM_b20447 - hypothetical protein, at 458,865 to 460,559 _b20447 SM_b20448: SM_b20448 - hypothetical protein, at 460,635 to 461,153 _b20448 SM_b20449: SM_b20449 - methyltransferase, at 461,270 to 462,328 _b20449 Position (kb) 460 461 462Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 459.705 kb on + strand, within SM_b20447at 459.705 kb on + strand, within SM_b20447at 459.705 kb on + strand, within SM_b20447at 459.706 kb on - strand, within SM_b20447at 459.706 kb on - strand, within SM_b20447at 459.832 kb on + strand, within SM_b20447at 459.832 kb on + strand, within SM_b20447at 459.838 kb on - strand, within SM_b20447at 459.838 kb on - strand, within SM_b20447at 460.079 kb on + strand, within SM_b20447at 460.080 kb on - strand, within SM_b20447at 460.169 kb on + strand, within SM_b20447at 460.188 kb on - strand, within SM_b20447at 460.197 kb on - strand, within SM_b20447at 460.248 kb on + strand, within SM_b20447at 460.263 kb on + strand, within SM_b20447at 460.305 kb on + strand, within SM_b20447at 460.306 kb on - strand, within SM_b20447at 460.591 kb on - strandat 460.766 kb on - strand, within SM_b20448at 460.787 kb on + strand, within SM_b20448at 460.787 kb on + strand, within SM_b20448at 460.831 kb on + strandat 460.832 kb on - strand, within SM_b20448at 460.953 kb on - strand, within SM_b20448at 460.998 kb on + strand, within SM_b20448at 461.155 kb on + strandat 461.156 kb on - strandat 461.265 kb on + strandat 461.266 kb on - strandat 461.275 kb on + strandat 461.276 kb on - strandat 461.276 kb on - strandat 461.276 kb on - strandat 461.309 kb on + strandat 461.309 kb on + strandat 461.309 kb on + strandat 461.310 kb on - strandat 461.310 kb on - strandat 461.310 kb on - strandat 461.351 kb on + strandat 461.351 kb on + strandat 461.352 kb on - strandat 461.498 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.792 kb on + strand, within SM_b20449at 461.792 kb on + strand, within SM_b20449at 461.792 kb on + strand, within SM_b20449at 461.793 kb on - strand, within SM_b20449at 461.793 kb on - strand, within SM_b20449at 461.793 kb on - strand, within SM_b20449at 461.931 kb on - strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.934 kb on + strand, within SM_b20449at 461.934 kb on + strand, within SM_b20449at 461.935 kb on - strand, within SM_b20449at 461.996 kb on + strand, within SM_b20449at 461.997 kb on - strand, within SM_b20449at 461.997 kb on - strand, within SM_b20449

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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459,705 + SM_b20447 0.50 +1.9
459,705 + SM_b20447 0.50 -0.4
459,705 + SM_b20447 0.50 +0.4
459,706 - SM_b20447 0.50 -0.4
459,706 - SM_b20447 0.50 -1.3
459,832 + SM_b20447 0.57 -2.3
459,832 + SM_b20447 0.57 +0.2
459,838 - SM_b20447 0.57 +0.5
459,838 - SM_b20447 0.57 +1.2
460,079 + SM_b20447 0.72 +0.4
460,080 - SM_b20447 0.72 +0.8
460,169 + SM_b20447 0.77 +1.3
460,188 - SM_b20447 0.78 -2.8
460,197 - SM_b20447 0.79 -0.5
460,248 + SM_b20447 0.82 +0.7
460,263 + SM_b20447 0.82 +0.4
460,305 + SM_b20447 0.85 -0.1
460,306 - SM_b20447 0.85 +0.9
460,591 - -2.4
460,766 - SM_b20448 0.25 +1.3
460,787 + SM_b20448 0.29 -0.7
460,787 + SM_b20448 0.29 +0.5
460,831 + -1.3
460,832 - SM_b20448 0.38 +0.3
460,953 - SM_b20448 0.61 +0.6
460,998 + SM_b20448 0.70 +1.1
461,155 + -0.4
461,156 - +0.3
461,265 + +0.0
461,266 - +0.2
461,275 + -1.9
461,276 - -0.6
461,276 - -1.4
461,276 - -1.7
461,309 + +0.3
461,309 + -0.2
461,309 + +0.1
461,310 - +0.0
461,310 - -2.3
461,310 - -0.3
461,351 + -0.4
461,351 + +1.2
461,352 - -1.5
461,498 + SM_b20449 0.22 +0.8
461,646 + SM_b20449 0.36 -3.9
461,646 + SM_b20449 0.36 -0.7
461,646 + SM_b20449 0.36 -0.2
461,646 + SM_b20449 0.36 +0.0
461,646 + SM_b20449 0.36 -0.0
461,646 + SM_b20449 0.36 +0.3
461,646 + SM_b20449 0.36 -0.4
461,646 + SM_b20449 0.36 -0.3
461,646 + SM_b20449 0.36 +0.6
461,646 + SM_b20449 0.36 -1.3
461,646 + SM_b20449 0.36 -0.4
461,646 + SM_b20449 0.36 -0.4
461,647 - SM_b20449 0.36 -0.7
461,647 - SM_b20449 0.36 -1.3
461,647 - SM_b20449 0.36 -0.7
461,647 - SM_b20449 0.36 -0.7
461,647 - SM_b20449 0.36 -3.8
461,647 - SM_b20449 0.36 +1.8
461,647 - SM_b20449 0.36 -0.7
461,786 + SM_b20449 0.49 -2.2
461,786 + SM_b20449 0.49 +0.6
461,786 + SM_b20449 0.49 -0.5
461,786 + SM_b20449 0.49 -0.2
461,786 + SM_b20449 0.49 -0.5
461,788 + SM_b20449 0.49 -0.9
461,788 + SM_b20449 0.49 -0.4
461,788 + SM_b20449 0.49 +0.6
461,788 + SM_b20449 0.49 +0.6
461,788 + SM_b20449 0.49 +0.4
461,789 - SM_b20449 0.49 -0.5
461,789 - SM_b20449 0.49 -1.7
461,789 - SM_b20449 0.49 -3.8
461,789 - SM_b20449 0.49 -1.7
461,792 + SM_b20449 0.49 -0.2
461,792 + SM_b20449 0.49 -2.7
461,792 + SM_b20449 0.49 -0.2
461,793 - SM_b20449 0.49 -1.1
461,793 - SM_b20449 0.49 -0.5
461,793 - SM_b20449 0.49 -2.9
461,931 - SM_b20449 0.62 +0.2
461,932 + SM_b20449 0.63 -3.1
461,932 + SM_b20449 0.63 +1.0
461,932 + SM_b20449 0.63 -0.4
461,932 + SM_b20449 0.63 -0.1
461,932 + SM_b20449 0.63 +2.7
461,933 - SM_b20449 0.63 -0.8
461,933 - SM_b20449 0.63 -1.2
461,933 - SM_b20449 0.63 -2.5
461,933 - SM_b20449 0.63 -1.3
461,934 + SM_b20449 0.63 -0.5
461,934 + SM_b20449 0.63 -1.3
461,935 - SM_b20449 0.63 -1.3
461,996 + SM_b20449 0.69 +0.5
461,997 - SM_b20449 0.69 -3.1
461,997 - SM_b20449 0.69 -2.1

Or see this region's nucleotide sequence