Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20426 and SM_b20427 are separated by 170 nucleotides SM_b20427 and SM_b20428 are separated by 58 nucleotides
SM_b20426: SM_b20426 - transcriptional regulator, at 440,994 to 442,274
_b20426
SM_b20427: SM_b20427 - amino acid ABC transporter ATP-binding protein, at 442,445 to 443,230
_b20427
SM_b20428: SM_b20428 - amino acid ABC transporter substrate-binding protein, at 443,289 to 444,140
_b20428
Position (kb) 442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 441.473 kb on + strand, within SM_b20426 at 441.474 kb on - strand, within SM_b20426 at 441.474 kb on - strand, within SM_b20426 at 441.474 kb on - strand, within SM_b20426 at 441.495 kb on + strand, within SM_b20426 at 441.771 kb on + strand, within SM_b20426 at 441.771 kb on + strand, within SM_b20426 at 441.771 kb on + strand, within SM_b20426 at 441.819 kb on + strand, within SM_b20426 at 442.653 kb on - strand, within SM_b20427 at 442.759 kb on + strand, within SM_b20427 at 442.760 kb on - strand, within SM_b20427 at 443.228 kb on + strand at 443.441 kb on + strand, within SM_b20428 at 443.547 kb on + strand, within SM_b20428 at 443.712 kb on + strand, within SM_b20428 at 443.712 kb on + strand, within SM_b20428 at 443.874 kb on + strand, within SM_b20428 at 443.967 kb on + strand, within SM_b20428 at 444.078 kb on + strand at 444.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 441,473 + SM_b20426 0.37 -0.3 441,474 - SM_b20426 0.37 -3.0 441,474 - SM_b20426 0.37 -2.1 441,474 - SM_b20426 0.37 -0.1 441,495 + SM_b20426 0.39 -0.2 441,771 + SM_b20426 0.61 +0.1 441,771 + SM_b20426 0.61 -0.2 441,771 + SM_b20426 0.61 -0.1 441,819 + SM_b20426 0.64 +0.1 442,653 - SM_b20427 0.26 -0.5 442,759 + SM_b20427 0.40 -1.7 442,760 - SM_b20427 0.40 -1.9 443,228 + +0.8 443,441 + SM_b20428 0.18 +0.3 443,547 + SM_b20428 0.30 +3.2 443,712 + SM_b20428 0.50 -0.4 443,712 + SM_b20428 0.50 -0.9 443,874 + SM_b20428 0.69 +1.4 443,967 + SM_b20428 0.80 -0.8 444,078 + -1.7 444,139 - +0.1
Or see this region's nucleotide sequence