Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20384 and SM_b20385 are separated by 13 nucleotides SM_b20385 and SM_b20386 overlap by 4 nucleotides SM_b20386 and SM_b20387 are separated by 1 nucleotides
SM_b20384: SM_b20384 - dipeptidase, at 395,419 to 396,390
_b20384
SM_b20385: SM_b20385 - hypothetical protein, at 396,404 to 397,132
_b20385
SM_b20386: SM_b20386 - hypothetical protein, at 397,129 to 398,865
_b20386
SM_b20387: SM_b20387 - transcriptional regulator, at 398,867 to 399,586
_b20387
Position (kb) 397
398
399 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 396.146 kb on + strand, within SM_b20384 at 396.321 kb on - strand at 396.544 kb on - strand, within SM_b20385 at 396.996 kb on + strand, within SM_b20385 at 396.996 kb on + strand at 397.052 kb on + strand, within SM_b20385 at 397.052 kb on + strand, within SM_b20385 at 397.052 kb on + strand, within SM_b20385 at 397.053 kb on - strand, within SM_b20385 at 397.132 kb on + strand at 397.151 kb on + strand at 397.151 kb on + strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.293 kb on + strand at 397.293 kb on + strand at 397.568 kb on + strand, within SM_b20386 at 397.568 kb on + strand, within SM_b20386 at 397.568 kb on + strand, within SM_b20386 at 397.569 kb on - strand, within SM_b20386 at 397.732 kb on + strand, within SM_b20386 at 397.733 kb on - strand, within SM_b20386 at 397.733 kb on - strand, within SM_b20386 at 397.733 kb on - strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.218 kb on - strand, within SM_b20386 at 398.218 kb on - strand, within SM_b20386 at 398.218 kb on - strand, within SM_b20386 at 398.219 kb on + strand, within SM_b20386 at 398.220 kb on - strand, within SM_b20386 at 398.220 kb on - strand, within SM_b20386 at 398.302 kb on - strand, within SM_b20386 at 398.302 kb on - strand, within SM_b20386 at 398.468 kb on + strand, within SM_b20386 at 398.468 kb on + strand, within SM_b20386 at 398.469 kb on - strand, within SM_b20386 at 398.469 kb on - strand, within SM_b20386 at 398.603 kb on + strand, within SM_b20386 at 398.646 kb on - strand, within SM_b20386 at 399.057 kb on + strand, within SM_b20387 at 399.131 kb on + strand, within SM_b20387 at 399.153 kb on - strand, within SM_b20387 at 399.570 kb on - strand at 399.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 396,146 + SM_b20384 0.75 -0.5 396,321 - -2.9 396,544 - SM_b20385 0.19 +0.3 396,996 + SM_b20385 0.81 -0.2 396,996 + -0.3 397,052 + SM_b20385 0.89 -0.4 397,052 + SM_b20385 0.89 -1.2 397,052 + SM_b20385 0.89 +0.1 397,053 - SM_b20385 0.89 +0.4 397,132 + -0.8 397,151 + -0.3 397,151 + -1.8 397,152 - +0.6 397,152 - +0.8 397,152 - -0.1 397,152 - +0.5 397,293 + +0.5 397,293 + -0.3 397,568 + SM_b20386 0.25 -0.3 397,568 + SM_b20386 0.25 -0.5 397,568 + SM_b20386 0.25 +0.2 397,569 - SM_b20386 0.25 +0.8 397,732 + SM_b20386 0.35 +0.3 397,733 - SM_b20386 0.35 -0.7 397,733 - SM_b20386 0.35 +0.6 397,733 - SM_b20386 0.35 +1.2 398,217 + SM_b20386 0.63 +0.8 398,217 + SM_b20386 0.63 -1.1 398,217 + SM_b20386 0.63 +0.8 398,217 + SM_b20386 0.63 -0.7 398,217 + SM_b20386 0.63 +0.5 398,217 + SM_b20386 0.63 +2.0 398,217 + SM_b20386 0.63 +0.8 398,218 - SM_b20386 0.63 +0.4 398,218 - SM_b20386 0.63 -2.3 398,218 - SM_b20386 0.63 -0.3 398,219 + SM_b20386 0.63 +0.4 398,220 - SM_b20386 0.63 +1.2 398,220 - SM_b20386 0.63 +1.3 398,302 - SM_b20386 0.68 +0.6 398,302 - SM_b20386 0.68 +1.9 398,468 + SM_b20386 0.77 +1.6 398,468 + SM_b20386 0.77 +0.1 398,469 - SM_b20386 0.77 +0.1 398,469 - SM_b20386 0.77 -0.1 398,603 + SM_b20386 0.85 +0.0 398,646 - SM_b20386 0.87 +1.1 399,057 + SM_b20387 0.26 -0.9 399,131 + SM_b20387 0.37 -1.0 399,153 - SM_b20387 0.40 +0.2 399,570 - +1.2 399,570 - -0.9
Or see this region's nucleotide sequence