Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20290 and SM_b20291 are separated by 7 nucleotides SM_b20291 and SM_b20292 are separated by 187 nucleotides
SM_b20290: SM_b20290 - transcriptional regulator, at 295,734 to 296,729
_b20290
SM_b20291: SM_b20291 - hypothetical protein, at 296,737 to 299,220
_b20291
SM_b20292: SM_b20292 - immunogenic protein, at 299,408 to 300,391
_b20292
Position (kb) 296
297
298
299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 295.818 kb on + strand at 295.818 kb on + strand at 295.819 kb on - strand at 296.158 kb on + strand, within SM_b20290 at 296.310 kb on + strand, within SM_b20290 at 296.310 kb on + strand, within SM_b20290 at 296.359 kb on - strand, within SM_b20290 at 296.801 kb on - strand at 296.924 kb on + strand at 296.924 kb on + strand at 296.925 kb on - strand at 296.925 kb on - strand at 296.925 kb on - strand at 297.155 kb on + strand, within SM_b20291 at 297.156 kb on - strand, within SM_b20291 at 297.321 kb on + strand, within SM_b20291 at 297.321 kb on + strand, within SM_b20291 at 297.322 kb on - strand, within SM_b20291 at 297.337 kb on + strand, within SM_b20291 at 297.338 kb on - strand, within SM_b20291 at 297.404 kb on + strand, within SM_b20291 at 297.545 kb on - strand, within SM_b20291 at 297.611 kb on + strand, within SM_b20291 at 297.612 kb on - strand, within SM_b20291 at 298.121 kb on + strand, within SM_b20291 at 298.199 kb on + strand, within SM_b20291 at 298.329 kb on - strand, within SM_b20291 at 298.339 kb on + strand, within SM_b20291 at 298.340 kb on - strand, within SM_b20291 at 298.343 kb on + strand, within SM_b20291 at 298.344 kb on - strand, within SM_b20291 at 298.403 kb on + strand, within SM_b20291 at 298.403 kb on + strand, within SM_b20291 at 298.403 kb on + strand, within SM_b20291 at 298.832 kb on + strand, within SM_b20291 at 298.832 kb on + strand, within SM_b20291 at 299.193 kb on - strand at 299.237 kb on - strand at 299.237 kb on - strand at 299.356 kb on + strand at 299.356 kb on + strand at 299.409 kb on + strand at 299.409 kb on + strand at 299.409 kb on + strand at 299.433 kb on + strand at 299.568 kb on + strand, within SM_b20292 at 299.652 kb on + strand, within SM_b20292 at 299.686 kb on - strand, within SM_b20292 at 299.770 kb on + strand, within SM_b20292 at 299.797 kb on - strand, within SM_b20292 at 300.008 kb on + strand, within SM_b20292 at 300.103 kb on - strand, within SM_b20292
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 295,818 + +0.1 295,818 + -1.3 295,819 - +0.7 296,158 + SM_b20290 0.43 -3.3 296,310 + SM_b20290 0.58 -2.9 296,310 + SM_b20290 0.58 -1.5 296,359 - SM_b20290 0.63 -0.5 296,801 - +0.3 296,924 + +0.5 296,924 + +1.1 296,925 - -2.5 296,925 - +0.1 296,925 - -1.0 297,155 + SM_b20291 0.17 -0.9 297,156 - SM_b20291 0.17 -0.0 297,321 + SM_b20291 0.24 +2.1 297,321 + SM_b20291 0.24 -2.8 297,322 - SM_b20291 0.24 -1.4 297,337 + SM_b20291 0.24 +0.9 297,338 - SM_b20291 0.24 -0.6 297,404 + SM_b20291 0.27 -1.0 297,545 - SM_b20291 0.33 -0.6 297,611 + SM_b20291 0.35 +1.3 297,612 - SM_b20291 0.35 -1.9 298,121 + SM_b20291 0.56 -0.5 298,199 + SM_b20291 0.59 -0.0 298,329 - SM_b20291 0.64 -0.3 298,339 + SM_b20291 0.64 -1.9 298,340 - SM_b20291 0.65 -2.1 298,343 + SM_b20291 0.65 -0.2 298,344 - SM_b20291 0.65 -0.9 298,403 + SM_b20291 0.67 +1.0 298,403 + SM_b20291 0.67 -0.9 298,403 + SM_b20291 0.67 +0.1 298,832 + SM_b20291 0.84 -2.1 298,832 + SM_b20291 0.84 +0.4 299,193 - +1.1 299,237 - +0.1 299,237 - -0.1 299,356 + +0.1 299,356 + +0.4 299,409 + +2.3 299,409 + +0.9 299,409 + +2.4 299,433 + +0.2 299,568 + SM_b20292 0.16 -0.1 299,652 + SM_b20292 0.25 +0.5 299,686 - SM_b20292 0.28 +0.0 299,770 + SM_b20292 0.37 -0.9 299,797 - SM_b20292 0.40 +0.5 300,008 + SM_b20292 0.61 +0.3 300,103 - SM_b20292 0.71 +0.8
Or see this region's nucleotide sequence