Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20147 and SM_b20148 are separated by 224 nucleotides SM_b20148 and SM_b20149 are separated by 3 nucleotides SM_b20149 and SM_b20150 are separated by 317 nucleotides
SM_b20147: SM_b20147 - alcohol dehydrogenase, at 162,355 to 163,461
_b20147
SM_b20148: SM_b20148 - transcriptional regulator, at 163,686 to 164,387
_b20148
SM_b20149: SM_b20149 - hypothetical protein, at 164,391 to 165,422
_b20149
SM_b20150: SM_b20150 - inositol monophosphatase, at 165,740 to 166,579
_b20150
Position (kb) 164
165
166 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 163.459 kb on + strand at 163.627 kb on + strand at 163.628 kb on - strand at 163.687 kb on + strand at 163.906 kb on + strand, within SM_b20148 at 163.907 kb on - strand, within SM_b20148 at 164.092 kb on + strand, within SM_b20148 at 164.093 kb on - strand, within SM_b20148 at 164.093 kb on - strand, within SM_b20148 at 164.191 kb on + strand, within SM_b20148 at 164.220 kb on + strand, within SM_b20148 at 164.220 kb on + strand, within SM_b20148 at 164.220 kb on + strand, within SM_b20148 at 164.248 kb on - strand, within SM_b20148 at 164.393 kb on - strand at 164.409 kb on + strand at 164.410 kb on - strand at 164.471 kb on + strand at 164.471 kb on + strand at 164.472 kb on - strand at 164.472 kb on - strand at 164.472 kb on - strand at 164.472 kb on - strand at 164.472 kb on - strand at 164.473 kb on + strand at 164.474 kb on - strand at 164.583 kb on - strand, within SM_b20149 at 164.583 kb on - strand, within SM_b20149 at 164.834 kb on + strand, within SM_b20149 at 164.834 kb on + strand, within SM_b20149 at 164.835 kb on - strand, within SM_b20149 at 164.835 kb on - strand, within SM_b20149 at 165.348 kb on - strand at 165.918 kb on + strand, within SM_b20150 at 165.919 kb on - strand, within SM_b20150 at 165.919 kb on - strand, within SM_b20150 at 165.984 kb on + strand, within SM_b20150 at 165.985 kb on - strand, within SM_b20150 at 166.130 kb on + strand, within SM_b20150 at 166.360 kb on + strand, within SM_b20150
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 163,459 + -0.3 163,627 + +0.0 163,628 - +0.0 163,687 + -0.4 163,906 + SM_b20148 0.31 -3.8 163,907 - SM_b20148 0.31 -1.7 164,092 + SM_b20148 0.58 -0.1 164,093 - SM_b20148 0.58 -0.3 164,093 - SM_b20148 0.58 +0.2 164,191 + SM_b20148 0.72 +0.2 164,220 + SM_b20148 0.76 -1.1 164,220 + SM_b20148 0.76 -1.1 164,220 + SM_b20148 0.76 +0.4 164,248 - SM_b20148 0.80 -2.1 164,393 - -2.3 164,409 + +2.3 164,410 - +0.4 164,471 + -1.6 164,471 + -1.0 164,472 - +0.1 164,472 - -0.0 164,472 - -0.4 164,472 - -2.1 164,472 - +0.3 164,473 + -3.2 164,474 - +0.5 164,583 - SM_b20149 0.19 -1.2 164,583 - SM_b20149 0.19 +0.3 164,834 + SM_b20149 0.43 -0.8 164,834 + SM_b20149 0.43 -1.4 164,835 - SM_b20149 0.43 +0.0 164,835 - SM_b20149 0.43 -0.7 165,348 - -1.4 165,918 + SM_b20150 0.21 -1.0 165,919 - SM_b20150 0.21 +0.6 165,919 - SM_b20150 0.21 -2.6 165,984 + SM_b20150 0.29 -1.0 165,985 - SM_b20150 0.29 +0.3 166,130 + SM_b20150 0.46 +0.3 166,360 + SM_b20150 0.74 +2.4
Or see this region's nucleotide sequence