Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20119 and SM_b22004 overlap by 20 nucleotides SM_b22004 and SM_b20121 overlap by 56 nucleotides SM_b20121 and SM_b20122 are separated by 181 nucleotides SM_b20122 and SM_b20123 are separated by 185 nucleotides
SM_b20119: SM_b20119 - hypothetical protein, at 132,609 to 132,965
_b20119
SM_b22004: SM_b22004 - plasmid stabilization system protein, at 132,946 to 133,338
_b22004
SM_b20121: SM_b20121 - hypothetical protein, at 133,283 to 133,558
_b20121
SM_b20122: SM_b20122 - hypothetical protein, at 133,740 to 134,075
_b20122
SM_b20123: SM_b20123 - transcriptional regulator, at 134,261 to 135,157
_b20123
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 132.848 kb on + strand, within SM_b20119 at 133.022 kb on + strand, within SM_b22004 at 133.025 kb on + strand, within SM_b22004 at 133.166 kb on + strand, within SM_b22004 at 133.167 kb on - strand, within SM_b22004 at 133.188 kb on - strand, within SM_b22004 at 133.368 kb on - strand, within SM_b20121 at 133.476 kb on + strand, within SM_b20121 at 133.609 kb on - strand at 133.610 kb on + strand at 133.654 kb on + strand at 133.654 kb on + strand at 133.654 kb on + strand at 133.689 kb on + strand at 133.689 kb on + strand at 133.702 kb on + strand at 133.723 kb on - strand at 133.723 kb on - strand at 133.830 kb on - strand, within SM_b20122 at 133.885 kb on + strand, within SM_b20122 at 133.885 kb on + strand, within SM_b20122 at 133.885 kb on + strand, within SM_b20122 at 133.886 kb on - strand, within SM_b20122 at 133.930 kb on - strand, within SM_b20122 at 134.034 kb on + strand, within SM_b20122 at 134.034 kb on + strand, within SM_b20122 at 134.034 kb on + strand, within SM_b20122 at 134.034 kb on + strand, within SM_b20122 at 134.034 kb on + strand, within SM_b20122 at 134.035 kb on - strand, within SM_b20122 at 134.035 kb on - strand, within SM_b20122 at 134.035 kb on - strand, within SM_b20122 at 134.092 kb on + strand at 134.097 kb on + strand at 134.496 kb on + strand, within SM_b20123 at 134.497 kb on - strand, within SM_b20123 at 134.793 kb on - strand, within SM_b20123 at 134.793 kb on - strand, within SM_b20123 at 134.922 kb on - strand, within SM_b20123 at 135.070 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 132,848 + SM_b20119 0.67 +0.1 133,022 + SM_b22004 0.19 -0.5 133,025 + SM_b22004 0.20 -1.9 133,166 + SM_b22004 0.56 +2.7 133,167 - SM_b22004 0.56 +2.2 133,188 - SM_b22004 0.62 -1.0 133,368 - SM_b20121 0.31 +0.4 133,476 + SM_b20121 0.70 -0.1 133,609 - +0.1 133,610 + -0.1 133,654 + -0.6 133,654 + +1.3 133,654 + -0.2 133,689 + +0.1 133,689 + +0.0 133,702 + +1.1 133,723 - -0.2 133,723 - -1.5 133,830 - SM_b20122 0.27 -1.3 133,885 + SM_b20122 0.43 +1.5 133,885 + SM_b20122 0.43 +1.4 133,885 + SM_b20122 0.43 +0.6 133,886 - SM_b20122 0.43 +0.2 133,930 - SM_b20122 0.57 +2.1 134,034 + SM_b20122 0.88 +1.4 134,034 + SM_b20122 0.88 +0.0 134,034 + SM_b20122 0.88 -0.5 134,034 + SM_b20122 0.88 +0.1 134,034 + SM_b20122 0.88 -1.6 134,035 - SM_b20122 0.88 +0.8 134,035 - SM_b20122 0.88 +1.9 134,035 - SM_b20122 0.88 -0.4 134,092 + +1.8 134,097 + -1.9 134,496 + SM_b20123 0.26 +0.6 134,497 - SM_b20123 0.26 -3.1 134,793 - SM_b20123 0.59 -0.9 134,793 - SM_b20123 0.59 +0.7 134,922 - SM_b20123 0.74 +0.4 135,070 + +0.5
Or see this region's nucleotide sequence