Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20088 and SM_b20089 are separated by 18 nucleotides SM_b20089 and SM_b20090 are separated by 3 nucleotides SM_b20090 and SM_b20091 are separated by 115 nucleotides SM_b20091 and SM_b20092 are separated by 85 nucleotides
SM_b20088: SM_b20088 - hypothetical protein, at 96,557 to 98,533
_b20088
SM_b20089: SM_b20089 - hypothetical protein, at 98,552 to 98,875
_b20089
SM_b20090: SM_b20090 - hypothetical protein, at 98,879 to 99,070
_b20090
SM_b20091: SM_b20091 - hypothetical protein, at 99,186 to 99,692
_b20091
SM_b20092: SM_b20092 - hypothetical protein, at 99,778 to 100,536
_b20092
Position (kb) 98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 97.595 kb on - strand, within SM_b20088 at 97.595 kb on - strand, within SM_b20088 at 97.631 kb on + strand, within SM_b20088 at 97.646 kb on + strand, within SM_b20088 at 97.646 kb on + strand, within SM_b20088 at 97.646 kb on + strand, within SM_b20088 at 97.648 kb on + strand, within SM_b20088 at 97.648 kb on + strand, within SM_b20088 at 97.649 kb on - strand, within SM_b20088 at 97.651 kb on + strand, within SM_b20088 at 97.651 kb on + strand, within SM_b20088 at 97.730 kb on + strand, within SM_b20088 at 97.769 kb on + strand, within SM_b20088 at 97.931 kb on + strand, within SM_b20088 at 97.934 kb on + strand, within SM_b20088 at 97.934 kb on + strand, within SM_b20088 at 97.935 kb on - strand, within SM_b20088 at 97.946 kb on + strand, within SM_b20088 at 97.946 kb on + strand, within SM_b20088 at 97.947 kb on - strand, within SM_b20088 at 97.947 kb on - strand, within SM_b20088 at 97.947 kb on - strand, within SM_b20088 at 97.947 kb on - strand, within SM_b20088 at 97.950 kb on - strand, within SM_b20088 at 97.988 kb on - strand, within SM_b20088 at 97.988 kb on - strand, within SM_b20088 at 97.988 kb on - strand, within SM_b20088 at 98.286 kb on + strand, within SM_b20088 at 98.287 kb on - strand, within SM_b20088 at 98.405 kb on + strand at 98.493 kb on + strand at 98.493 kb on + strand at 98.494 kb on - strand at 98.494 kb on - strand at 98.553 kb on + strand at 98.554 kb on - strand at 98.554 kb on - strand at 98.800 kb on - strand, within SM_b20089 at 98.800 kb on - strand, within SM_b20089 at 98.853 kb on + strand at 98.854 kb on - strand at 98.854 kb on - strand at 98.855 kb on + strand at 98.856 kb on - strand at 98.880 kb on + strand at 99.180 kb on + strand at 99.192 kb on - strand at 99.404 kb on + strand, within SM_b20091 at 99.405 kb on - strand, within SM_b20091 at 99.489 kb on + strand, within SM_b20091 at 99.491 kb on + strand, within SM_b20091 at 99.491 kb on + strand, within SM_b20091 at 99.491 kb on + strand, within SM_b20091 at 99.492 kb on - strand, within SM_b20091 at 99.492 kb on - strand, within SM_b20091 at 99.503 kb on + strand, within SM_b20091 at 99.504 kb on - strand, within SM_b20091 at 99.507 kb on + strand, within SM_b20091 at 99.779 kb on + strand at 99.780 kb on - strand at 99.780 kb on - strand at 99.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 97,595 - SM_b20088 0.53 -0.2 97,595 - SM_b20088 0.53 +3.7 97,631 + SM_b20088 0.54 -0.1 97,646 + SM_b20088 0.55 +0.6 97,646 + SM_b20088 0.55 +0.4 97,646 + SM_b20088 0.55 -1.8 97,648 + SM_b20088 0.55 -0.1 97,648 + SM_b20088 0.55 +1.4 97,649 - SM_b20088 0.55 -0.2 97,651 + SM_b20088 0.55 +1.4 97,651 + SM_b20088 0.55 +0.9 97,730 + SM_b20088 0.59 -0.2 97,769 + SM_b20088 0.61 +0.3 97,931 + SM_b20088 0.69 +0.6 97,934 + SM_b20088 0.70 +1.0 97,934 + SM_b20088 0.70 +2.1 97,935 - SM_b20088 0.70 -0.1 97,946 + SM_b20088 0.70 +0.8 97,946 + SM_b20088 0.70 -0.4 97,947 - SM_b20088 0.70 +0.4 97,947 - SM_b20088 0.70 -0.7 97,947 - SM_b20088 0.70 +0.1 97,947 - SM_b20088 0.70 -0.3 97,950 - SM_b20088 0.70 +0.1 97,988 - SM_b20088 0.72 -3.5 97,988 - SM_b20088 0.72 -0.9 97,988 - SM_b20088 0.72 -0.1 98,286 + SM_b20088 0.87 +0.8 98,287 - SM_b20088 0.88 -0.8 98,405 + -1.9 98,493 + -2.6 98,493 + -0.1 98,494 - +0.6 98,494 - -1.4 98,553 + +0.8 98,554 - -0.6 98,554 - -0.0 98,800 - SM_b20089 0.77 -1.5 98,800 - SM_b20089 0.77 -0.2 98,853 + -2.9 98,854 - +0.2 98,854 - +1.5 98,855 + -0.5 98,856 - -1.5 98,880 + -0.0 99,180 + -0.6 99,192 - -0.4 99,404 + SM_b20091 0.43 +0.2 99,405 - SM_b20091 0.43 -1.3 99,489 + SM_b20091 0.60 +0.4 99,491 + SM_b20091 0.60 -0.8 99,491 + SM_b20091 0.60 +0.1 99,491 + SM_b20091 0.60 +1.2 99,492 - SM_b20091 0.60 -0.5 99,492 - SM_b20091 0.60 -1.1 99,503 + SM_b20091 0.63 -0.1 99,504 - SM_b20091 0.63 +0.5 99,507 + SM_b20091 0.63 -1.0 99,779 + -0.2 99,780 - +2.0 99,780 - -1.0 99,780 - -0.1
Or see this region's nucleotide sequence