Experiment: nitrate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20002 and SM_b20003 are separated by 58 nucleotides SM_b20003 and SM_b20004 are separated by 6 nucleotides
SM_b20002: SM_b20002 - ABC transporter for Lactose, ATPase component <small>(from data)</small>, at 5,350 to 6,426
_b20002
SM_b20003: SM_b20003 - pyrroline-5-carboxylate reductase, at 6,485 to 7,261
_b20003
SM_b20004: SM_b20004 - gstR-like transcriptional regulator protein, at 7,268 to 8,173
_b20004
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.599 kb on + strand, within SM_b20002 at 5.599 kb on + strand, within SM_b20002 at 5.599 kb on + strand, within SM_b20002 at 5.608 kb on + strand, within SM_b20002 at 5.608 kb on + strand, within SM_b20002 at 5.616 kb on + strand, within SM_b20002 at 5.617 kb on - strand, within SM_b20002 at 5.617 kb on - strand, within SM_b20002 at 5.635 kb on - strand, within SM_b20002 at 5.635 kb on - strand, within SM_b20002 at 5.706 kb on + strand, within SM_b20002 at 5.863 kb on - strand, within SM_b20002 at 5.914 kb on + strand, within SM_b20002 at 5.915 kb on - strand, within SM_b20002 at 6.013 kb on + strand, within SM_b20002 at 6.014 kb on - strand, within SM_b20002 at 6.281 kb on - strand, within SM_b20002 at 6.448 kb on + strand at 6.448 kb on + strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.490 kb on + strand at 6.947 kb on + strand, within SM_b20003 at 6.948 kb on - strand, within SM_b20003 at 6.986 kb on + strand, within SM_b20003 at 6.986 kb on + strand, within SM_b20003 at 6.987 kb on - strand, within SM_b20003 at 7.059 kb on - strand, within SM_b20003 at 7.059 kb on - strand, within SM_b20003 at 7.549 kb on + strand, within SM_b20004 at 7.806 kb on - strand, within SM_b20004 at 7.813 kb on + strand, within SM_b20004 at 7.980 kb on + strand, within SM_b20004 at 7.981 kb on - strand, within SM_b20004 at 7.981 kb on - strand, within SM_b20004 at 7.981 kb on - strand, within SM_b20004 at 7.981 kb on - strand, within SM_b20004 at 8.092 kb on + strand at 8.093 kb on - strand at 8.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 40 mM remove 5,599 + SM_b20002 0.23 +0.6 5,599 + SM_b20002 0.23 +0.4 5,599 + SM_b20002 0.23 -0.1 5,608 + SM_b20002 0.24 -0.2 5,608 + SM_b20002 0.24 -0.2 5,616 + SM_b20002 0.25 -0.2 5,617 - SM_b20002 0.25 -2.1 5,617 - SM_b20002 0.25 +0.0 5,635 - SM_b20002 0.26 -1.9 5,635 - SM_b20002 0.26 -0.8 5,706 + SM_b20002 0.33 +0.7 5,863 - SM_b20002 0.48 +0.7 5,914 + SM_b20002 0.52 -0.0 5,915 - SM_b20002 0.52 +0.2 6,013 + SM_b20002 0.62 +1.4 6,014 - SM_b20002 0.62 -1.0 6,281 - SM_b20002 0.86 -1.7 6,448 + -0.1 6,448 + +2.0 6,449 - -0.4 6,449 - +1.2 6,449 - +1.4 6,449 - -1.1 6,490 + +0.8 6,947 + SM_b20003 0.59 -1.9 6,948 - SM_b20003 0.60 -0.2 6,986 + SM_b20003 0.64 +1.9 6,986 + SM_b20003 0.64 +0.1 6,987 - SM_b20003 0.65 +0.3 7,059 - SM_b20003 0.74 +0.6 7,059 - SM_b20003 0.74 +1.1 7,549 + SM_b20004 0.31 -1.4 7,806 - SM_b20004 0.59 -0.0 7,813 + SM_b20004 0.60 +0.6 7,980 + SM_b20004 0.79 -1.2 7,981 - SM_b20004 0.79 -0.7 7,981 - SM_b20004 0.79 +1.2 7,981 - SM_b20004 0.79 -0.4 7,981 - SM_b20004 0.79 -0.4 8,092 + +1.0 8,093 - -0.4 8,093 - -0.3
Or see this region's nucleotide sequence